FastQCFastQC Report
Sat 23 Sept 2023
SRR19918503_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918503_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15816941
Total Bases790.8 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA266170.1682815912381541No Hit
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG247160.15626283236436173No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG187930.1188156420384953No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG186090.11765233239474054No Hit
GGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA184460.11662179178641432No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)