FastQCFastQC Report
Sat 23 Sept 2023
SRR19918504_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918504_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15403479
Total Bases770.1 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA258800.16801399216371835No Hit
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG242700.15756180795260605No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG184050.1194859940406969No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG181620.11790842834920605No Hit
GGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA180820.11738906515859178No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)