FastQCFastQC Report
Sat 23 Sept 2023
SRR19918505_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918505_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15412133
Total Bases770.6 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA248540.1612625585309963No Hit
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG235970.15310664656215983No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG178610.11588921533443813No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG175580.11392323178109091No Hit
GGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA172090.11165878207773057No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)