FastQCFastQC Report
Sat 23 Sept 2023
SRR19918506_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR19918506_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15508091
Total Bases775.4 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA248580.1602905218959574No Hit
CGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG237480.15313296781660618No Hit
GGCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG178330.11499158729465798No Hit
CCCCCCCAGAAAAGGTGTTGGTTGATATAGACAGCAGGACGGTGGCCATG177270.11430807312131455No Hit
GGGGGGGGGAGTATGGTTGCAAAGCTGAAAAAAAAAAAAAAAGATCGGAA176940.1140952809730095No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)