FastQCFastQC Report
Sun 2 Jul 2023
SRR2007100.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2007100.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24517717
Total Bases1.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAAGATCGGAAGAGCAC4842891.9752613997461508No Hit
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATCTCGTATG2948301.2025181626821126TruSeq Adapter, Index 5 (100% over 49bp)
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATAGATCGGAAGAGCAC2691141.0976307459621955No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACAGATCGGAAGAGCACACG1611030.6570880967424496No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTAGATCGGAAGAGCA1236710.504414827856933No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCAGATCGGAAGAGCACA1133970.46251043684042853No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAGATCGGAAGAGC982070.4005552392989935No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTAGATCGGAAGAGCACAC905440.36930029007186926No Hit
ATATTAAATGGATTTTTGGAAGTAGGAGTTGGAGATCGGAAGAGCACACG702980.28672327035996054No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAAAGATCGGAAGAGCACA652040.2659464582285537No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCAGATCGGAAGAGCACA615430.2510143990975995No Hit
ATATTAAATGGATTTTTGGAAGTAGGAGTTGGAAGATCGGAAGAGCACAC527010.21495068239836523No Hit
TCGCTGCGATCTATTGAAAGTCAGCCCTCGACACAGATCGGAAGAGCACA519500.21188759132834434No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTAGATCGGAAGAGCACAC480630.1960337497981562No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTAGATCGGAAGAGCAC474910.19370074301779402No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCAGATCGGAAGAGCACACG464460.18943851909213244No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAACAGATCGGAAGAGCAC440250.17956402710741787No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGATAGATCGGAAGAGCACACG355440.14497271503704853No Hit
TATATTAAATGGATTTTTGGAAGTAGGAGTTGGAGATCGGAAGAGCACAC347020.14153846379742452No Hit
GGGAGACCGCCTGGGAATACCGGGTGCTGTAGGCTTAGATCGGAAGAGCA343050.13991922657399136No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCCAGATCGGAAGAGCAC340010.1386793068865262No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGTTAGATCGGAAGAGCACA299480.12214840394805113No Hit
GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTTAGATCGGAAGAGCACA295880.12068007800236866No Hit
TATATTAAATGGATTTTTGGAAGTAGGAGTTGGAAGATCGGAAGAGCACA282050.11503925916103853No Hit
TGGGTCGGGGTTTCGTACGTAGCAGAGCAGCTCCTAGATCGGAAGAGCAC279450.11397880153360118No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGTAGATCGGAAGAGCACACG261730.10675137493429752No Hit
GGCCGTGATCGTATAGTGGTTAGTACTCTGCGTAGATCGGAAGAGCACAC250010.10197115824446461No Hit
TCCCTGTGGTCTAGTGGTTAGGATTCGGCGCTCAGATCGGAAGAGCACAC247000.10074347460654676No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)