FastQCFastQC Report
Fri 30 Jun 2023
SRR2043967_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2043967_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21467666
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length35-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4662652.1719408155502324No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCAAT4585532.1360170220647183No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACCATCAAT2818731.3130118569946077No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCAT2336741.0884928058783847No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCAAT2249241.0477338337572422No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGTACCATCAAT1622980.7560113894076794No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACTATCAAT1541090.7178656496705323No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGACCATCAAT1368990.637698574218548No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCATC1312100.6111982550874417No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGCACCATCAAT1252850.5835986082511252No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACTATCAAT1152890.5370355584999319No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCATCA1067770.49738523042048444No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGACCATCAAT1015600.4730835666997986No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGTACCATCAAT1001160.4663571717577496No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACATCAAT974380.4538825972045587No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCATCATCAAT940150.4379376873107677No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATTAAT934070.43510552101937866No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGCACCATCAAT891430.4152430916337156No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCATCATCAAT875130.40765027739857695No Hit
GTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCAT859000.4001366520235595No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGCACCATCAAT827940.3856683814626145No Hit
CAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGCACCATCAAT791650.3687638889108858No Hit
TGGAGGTGACCGGTACTAATAGGCCGACTGTAGGCACCATCAAT758420.3532847958413365No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACATCAAT755740.35203640675236886No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCCTGTAGGCACCATCAAT746700.34782542266122457No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACCATTAAT731650.34081487945638805No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACTATCAAT729870.33998572550923795No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGACCATC691720.3222148136644198No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACTAT690730.32175365500842057No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGTACCATCAAT687610.3203003065167867No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGACCATCAAT681500.31745416572067037No Hit
AAGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACCATCAAT635740.2961383878433734No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCCCATCAAT589230.2744732473478952No Hit
AAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGCACCATCAAT564010.2627253470405213No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGTACCAT563270.2623806425905825No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACTATC536960.25012500194478526No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCAACATCAAT517890.24124187510649736No Hit
AGGCGTTCGGGTGAACTATGGTTAAGGAACTGTAGGCACCATCAAT509130.2371613197261407No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCATCAT507720.23650451800396No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGCACCATCAAT505910.23566138955208263No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGACCATCA499320.2325916566803303No Hit
TGAAGTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCA489990.2282455857101559No Hit
ATTCCGGGAGTAGTGGCGAGCGAAACCGGATGCTGTAGGCACCATCAAT483810.22536683773634264No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGCACCATC481540.22430943354531416No Hit
AGGCGTTCGGGTGAACTATGGTTAAGGAACCTGTAGGCACCATCAAT471490.2196279744616858No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACATC464440.2163439658507823No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACATCAAT455900.21236589017175878No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGTACCATC447710.20855085038121984No Hit
TCAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGCACCATCAAT442800.20626368977419343No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCATCATCAAT442760.20624505710122373No Hit
ACCCCGGGACCTTTACTACAGTTTGATATTGGCTGTAGGCACCATCAAT417420.19444125877494087No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACTATCA415920.19374253353857845No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATTAAT395910.18442153888550342No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGACCATCAA390090.18171048496841716No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCATCATC389090.18124466814417553No Hit
TGTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCAAT387180.180354958009874No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGCACCATCA385150.1794093498566635No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCAACATCAAT379010.17654923455581992No Hit
TAGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACCATCAAT362780.16898902749837827No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCCTGTAGGCACCATCAAT357990.16675776491026087No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGTACCATCA356740.1661754938799588No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACATCA355700.1656910443827475No Hit
AGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCCCATCAAT354660.1652065948855362No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGCACTATCAAT353430.16463364019171903No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGACCATCAAT352190.1640560273296594No Hit
AAGTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCAAT349770.16292875061499468No Hit
GGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCAAT348350.16226729072457155No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGTACCATCAAT343500.16000807912699963No Hit
TAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCATT331070.1542179760016762No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCATCATCA317810.1480412449122322No Hit
ATTCCGGGAGTAGTGGCGAGCGAAACCGGATCTGTAGGCACCATCAAT307060.14303371405163468No Hit
AGCGGGAAGCCTGCTTCGAGATGAGGACTCCCCTGTAGGCACCATCAAT300000.1397450472724888No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGCACCATCAA296850.13827772427612764No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCCTGTAGGTACCATCAAT295610.13770011141406802No Hit
CAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGACCATCAAT289350.13478409809431544No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGCATCATCAAT288010.13415990354983165No Hit
TAGGCGTTCGGGTGAACTATGGTTAAGGAACTGTAGGCACCATCAAT285570.13302331049868205No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCCTGTAGCACCATCAAT280940.1308665786024433No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCACTGTAGGCACCATC279600.13024238405795954No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCCTGTAGGCACTATCAAT276110.12861668334135626No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACATCAA274440.12783876924487272No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGCACCATCAAT273620.1274567994489946No Hit
TGGCCGCAGAGACCAGCGAGAAGCGACTGTTTACTACTGTAGGCACCATC266750.12425663786645459No Hit
AAGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGCACTATCAAT265000.12344145842403174No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCCCATCAAT262920.12247255942960916No Hit
TAGGCGTTCGGGTGAACTATGGTTAAGGAACCTGTAGGCACCATCAAT261510.12181575770742847No Hit
GGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGCACCATCAAT257650.12001770476585578No Hit
TATGCTGTCGAGAAAAGCCTCTGTAGGCACCATCAAT256470.11946804091325065No Hit
TAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGCACCATCAAT252590.11766067163519313No Hit
CAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGCACTATCAAT252210.11748366124198131No Hit
GTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGACCATC250140.11651942041580116No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCCTGTAGGACCATCAAT249610.11627253749895308No Hit
AGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCATTA247780.1154200927105909No Hit
GTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACTAT247230.11516389345725801No Hit
TTGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTAGGCAACATCAAT245800.11449777539859246No Hit
TGGAGGTGACCGGTACTAATAGGCCGACTGTAGGTACCATCAAT244500.11389221352707836No Hit
TGGAGGTGACCGGTACTAATAGGCCGACTGTAGGCACTATCAAT241200.11235501800708096No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCCCATC238580.11113457792756791No Hit
GAGGCGTTCGGGTGAACTATGGTTAAGGAACCTGTAGGCACCATCAAT236020.10994208685750934No Hit
AAGCGGGAAGCCTGCTTCGAGATGAGGACTCCCCTGTAGGCACCATCAAT235300.10960669874405538No Hit
TTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCAACAT235170.10954614255690395No Hit
CAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGTACCATCAAT232450.10827912079496671No Hit
GGAGGTGACCGGTACTAATAGGCCGACTGTAGGCACCATCAAT227810.10611773073048555No Hit
AAGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGACCATCAAT227700.10606649087981897No Hit
ATTCCGGGAGTAGTGGCGAGCGAAACCGGATGCTGTAGGCACTATCAAT224320.10449203001388228No Hit
CAAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGCACCATCAAT222950.10385386096467124No Hit
AAGTAGCACGGGGCCCGAGAAATCCCGTGTGACTGTAGGTACCATCAAT222600.10369082507618668No Hit
AAGGGCATGGCTGGTTGGCTACGTTCGGGACTGTAGGACCATCAAT222570.10367685057145944No Hit
TGGATGATCCTATGCTGTCGAGAAAAGCCTCTGTGGCACCATCAAT218600.10182755777922016No Hit
TGGAGGTGACCGGTACTAATAGGCCGAGCTGTAGGCACATCAAT217820.1014642206563117No Hit
TAAGCGGGAAGCCTGCTTCGAGATGAGGACTCCCCTGTAGGCACCATCAA216880.10102635284152456No Hit
TGGAGGTGACCGGTACTAATAGGCCGACTGTAGGACCATCAAT216470.10083536794358548No Hit
GTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGTACCAT216080.10065369938213126No Hit
TGTAGCGGGGCTCAAGCGTACCGCCGAAGTCGTGTCATCTGTAGGCACCA216010.10062109220443434No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)