FastQCFastQC Report
Sat 23 Sept 2023
SRR20613393_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20613393_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23834974
Total Bases708.8 Mbp
Sequences flagged as poor quality0
Sequence length13-48
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGACTGCATAATTTGTGGTAGTGGGGG5430992.2785802073876815No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG3846311.6137252761425291No Hit
GACTGCATAATTTGTGGTAGTGGGGG3098271.2998839436535572No Hit
CGACTGCATAATTTGTGGTAGTGGGGG2143640.899367458928212No Hit
AATGGATTTTTGGAGCAGGGAGATGGA1728600.7252367885947767No Hit
AAATGGATTTTTGGAGCAGGGAGATGGA1484590.6228620178062707No Hit
GACTGCATAATTTGTGGTAGTGGGGGA1371110.575251309273507No Hit
ATGGATTTTTGGAGCAGGGAGATGGA617940.2592576773945715No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG551440.23135750011726466No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAAC523860.21978626869909737No Hit
TGACTGCATAATTTGTGGTAGTGGGGG493580.20708224812831766No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA463490.1944579423497588No Hit
TAAATGGATTTTTGGAGCAGGGAGATGGA463020.19426075312689664No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA435990.1829202750546319No Hit
CTCGACTGCATAATTTGTGGTAGTTGGGG385460.16172033583925874No Hit
ACTGCATAATTTGTGGTAGTGGGGG323850.13587176558279443No Hit
GGAGATACCATGATCACGAAGGTGGT319150.13389987335417275No Hit
TGGATTTTTGGAGCAGGGAGATGGA288360.12098188149901065No Hit
AAATGGATTTTTGGAAATAGGAGATGGA260960.10948616935768421No Hit
AATGGATTTTTGGAAATAGGAGATGGA260910.10946519178078398No Hit
TCGACTGCATAATTTGTGGTAGTGGGG256730.1077114663519247No Hit

[OK]Adapter Content

Adapter graph