FastQCFastQC Report
Sat 23 Sept 2023
SRR20613394_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20613394_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22774043
Total Bases670.6 Mbp
Sequences flagged as poor quality0
Sequence length13-48
%GC50

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGACTGCATAATTTGTGGTAGTGGGGG3470931.524072822730685No Hit
GACTGCATAATTTGTGGTAGTGGGGG3310991.4538437465846534No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG2990731.313218737665508No Hit
CGACTGCATAATTTGTGGTAGTGGGGG2130800.9356265815428555No Hit
AATGGATTTTTGGAGCAGGGAGATGGA1892570.8310206492540653No Hit
GACTGCATAATTTGTGGTAGTGGGGGA1424580.6255279310748645No Hit
AAATGGATTTTTGGAGCAGGGAGATGGA1258580.5526379308232622No Hit
ATGGATTTTTGGAGCAGGGAGATGGA571180.2508030743596998No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAAC539190.23675638093771934No Hit
TGACTGCATAATTTGTGGTAGTGGGGG475990.2090054892756635No Hit
GGAGATACCATGATCACGAAGGTGGT398900.17515554879737427No Hit
ACTGCATAATTTGTGGTAGTGGGGG381910.16769530118126147No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG349550.15348614209606964No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA314660.13816606915162144No Hit
GACTGCATAATTTGTGGTAGTGGGG305580.1341790739571362No Hit
TAAATGGATTTTTGGAGCAGGGAGATGGA286480.12579233296433137No Hit
CACCTCTAGCATCACCAGTATTAGAGGCA279880.12289429680974959No Hit
AATGGATTTTTGGAAATAGGAGATGGA265250.11647031666709332No Hit
GAGATACCATGATCACGAAGGTGGT259560.11397185822473417No Hit
CTCGACTGCATAATTTGTGGTAGTTGGGG244970.10756544193756022No Hit
AATGGATTTTTGGAGCAGGGAGATGG244360.10729759314145496No Hit
ACTGCATAATTTGTGGTAGTGGGGGA239010.10494842747069547No Hit
TGGATTTTTGGAGCAGGGAGATGGA232680.10216894734061932No Hit
CGACTGCATAATTTGTGGTAGTTGGGG230890.10138296480778577No Hit

[OK]Adapter Content

Adapter graph