FastQCFastQC Report
Sat 23 Sept 2023
SRR20613396_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20613396_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16409385
Total Bases488 Mbp
Sequences flagged as poor quality0
Sequence length13-48
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGACTGCATAATTTGTGGTAGTGGGGG2418401.4737907605921856No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG2305211.40481194145911No Hit
GACTGCATAATTTGTGGTAGTGGGGG1836861.119396004176878No Hit
CGACTGCATAATTTGTGGTAGTGGGGG1119600.6822924807968123No Hit
GACTGCATAATTTGTGGTAGTGGGGGA652460.3976139264207647No Hit
AATGGATTTTTGGAGCAGGGAGATGGA559120.34073184339327767No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAAC476180.29018759691481427No Hit
AAATGGATTTTTGGAGCAGGGAGATGGA355780.2168149507126562No Hit
TGACTGCATAATTTGTGGTAGTGGGGG320900.19555882197900776No Hit
AGGTCGGTTTCTATCTACTTCAAATTCCTC235900.14375919633794929No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA227080.13838422341848886No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA196390.11968151152526435No Hit
CTCGACTGCATAATTTGTGGTAGTGGGG187380.11419075120731215No Hit
ACTGCATAATTTGTGGTAGTGGGGG165250.10070456631982247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)