FastQCFastQC Report
Sat 23 Sept 2023
SRR20613398_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR20613398_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16919282
Total Bases504.3 Mbp
Sequences flagged as poor quality0
Sequence length13-48
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCGACTGCATAATTTGTGGTAGTGGGGG2061811.2186155417233426No Hit
TCGACTGCATAATTTGTGGTAGTGGGGG1863081.1011578387309815No Hit
GACTGCATAATTTGTGGTAGTGGGGG1673630.9891850020585979No Hit
CGACTGCATAATTTGTGGTAGTGGGGG925080.5467607904401617No Hit
GACTGCATAATTTGTGGTAGTGGGGGA654110.3866062401465972No Hit
AGGTCGGTTTCTATCTACTTCAAATTCCTC383480.22665264400699744No Hit
AATGGATTTTTGGAGCAGGGAGATGGA346820.20498505787656948No Hit
TGACTGCATAATTTGTGGTAGTGGGGG267110.15787312960443592No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGA243890.14414914297190626No Hit
AAATGGATTTTTGGAGCAGGGAGATGGA234300.13848105374684339No Hit
CGACTGCATAATTTGTGGTAGTGGGGGA231970.13710392675055597No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)