FastQCFastQC Report
Sat 1 Jul 2023
SRR2148106_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2148106_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18232265
Total Bases512.7 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTCCGTCGCGGGGGCGGGG874700.47975388685936715No Hit
CCGAGCGCACGGGGTCGGCGGCGAT777520.4264527747923804No Hit
GCCGAGCGCACGGGGTCGGCGGCGA717900.39375250414580965No Hit
CCCGTCCTCGCCGCGCGGCGGCGG712810.3909607500768555No Hit
GTCGCTCCGTCGCGGGGGCGGGGAGCGG570110.31269291006904515No Hit
CGTCGCTCCGTCGCGGGGGCGGG565250.3100273059874898No Hit
GGTGACCTCCCGGGAGCGGGGGACCACCAG535970.29396786411342746No Hit
GTCGCTCCGTCGCGGGGGCGGGGA464120.2545597050064817No Hit
CCCCGTCCTCGCCGCGCGGCGGCGG359380.19711209770151983No Hit
CGTCGCTCCGTCGCGGGGGCGGGG347630.1906674787800638No Hit
CGTCGCTCCGTCGCGGGGGCGGGGA307390.1685967157673498No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT306120.16790014844562648No Hit
GTCGCTCCGTCGCGGGGGCGGGGAGCGGTCGGG301610.16542651173619954No Hit
TGGTGACCTCCCGGGAGCGGGGGACCACCAG291050.15963458187998034No Hit
CACCCCGTCTCCGCCCCCCGGCCC250330.1373005493283473No Hit
GCCGAGCGCACGGGGTCGGCGGCGAT244380.1340371040021632No Hit
TCGTCGCTCCGTCGCGGGGGCGGGG240800.13207355202439194No Hit
CCTCTAGCATTACCAGTATTAGAGGC240630.1319803107293581No Hit
TCGTCGCTCCGTCGCGGGGGCGG225300.12357213983013081No Hit
ACCTCTAGCATTACCAGTATTAGAGGC219490.1203854814527981No Hit
GTCGCTCCGTCGCGGGGGCGGG211760.11614574491978918No Hit
CGTCGCTCCGTCGCGGGGGCGGGGAGCGG211640.11607992753505943No Hit
TCGTCGCTCCGTCGCGGGGGCGGG208900.11457709725039648No Hit
GGTGACCTCCCGGGAGCGGGGGACCACCAGG206920.11349111040235538No Hit
GGAGCCCGGCGGGCGCCGGCGCGCCCCCCTCTCCCCGT194490.10667352630076404No Hit
TGGTGACCTCCCGGGAGCGGGGGACCACCAGG185330.10164946593305879No Hit
TGCTAAGACCTCACCAGTCAAAGCGAA184060.10095289861133545No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)