FastQCFastQC Report
Sat 1 Jul 2023
SRR2148108_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2148108_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47673057
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length21-42
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CACCCCGTCTCCGCCCCCCGGCCC2614190.5483579540535863No Hit
GCCGAGCGCACGGGGTCGGCGGCGA1915490.4017971828406137No Hit
CCGAGCGCACGGGGTCGGCGGCGAT1579600.33134019494491407No Hit
GTCGCTCCGTCGCGGGGGCGGGGAGCGG1554730.32612341180470134No Hit
GTCGCTCCGTCGCGGGGGCGGGG1396860.2930082708981721No Hit
GTCGCTCCGTCGCGGGGGCGGGGA1341290.28135179164197505No Hit
TCGTCGCTCCGTCGCGGGGGCGGGG1018530.21364897996786736No Hit
CGTCGCTCCGTCGCGGGGGCGGGG971190.20371884269976642No Hit
CGTCGCTCCGTCGCGGGGGCGGGGA898230.1884146007251014No Hit
CGTCGCTCCGTCGCGGGGGCGGG871140.1827321457484885No Hit
CCTCTAGCATTACCAGTATTAGAGGC771940.16192374657240882No Hit
TCGTCGCTCCGTCGCGGGGGCGG636210.13345273830457316No Hit
GGAGAGCGACGCTCAGACAGGC623860.13086217651198664No Hit
TCGTCGCTCCGTCGCGGGGGCGGG602570.1263963416484913No Hit
ACCTCTAGCATTACCAGTATTAGAGGC581000.12187177340022479No Hit
CGTCGCTCCGTCGCGGGGGCGGGGAGCGG516280.10829597103454054No Hit
TCGTCGCTCCGTCGCGGGGGCGGGGA515740.10818269950676754No Hit
CACCCCGTCTCCGCCCCCCGG508490.10666192436537057No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT506240.10618995966631634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)