FastQCFastQC Report
Sat 1 Jul 2023
SRR2148110_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2148110_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30462700
Total Bases868.5 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGAGCGCACGGGGTCGGCGGCGAT1651980.5422959882085304No Hit
GCCGAGCGCACGGGGTCGGCGGCGA1527540.5014460307195356No Hit
CCTCTAGCATTACCAGTATTAGAGGC1154490.37898479123649575No Hit
GTCGCTCCGTCGCGGGGGCGGGGAGCGG1084760.3560945024571033No Hit
ACCTCTAGCATTACCAGTATTAGAGGC905220.2971568508372534No Hit
CACCCCGTCTCCGCCCCCCGGCCC773990.25407793793721506No Hit
TCGTCGCTCCGTCGCGGGGGCGGGG626740.20574013465648155No Hit
GTCGCTCCGTCGCGGGGGCGGGGA551830.18114940566660212No Hit
TGCCAAGACCTCACCAGTCAAAGCGAA528930.17363201554688193No Hit
AATACAAGCTTGGGCTGCAGGTCGACCCG522680.17158032610372687No Hit
GTCGCTCCGTCGCGGGGGCGGGGAGCGGTCGGG461850.15161164309138717No Hit
AATACAAGCTTGGGCTGCAGGTCGAC414490.1360647611669353No Hit
CGTCGCTCCGTCGCGGGGGCGGGGA391190.1284160629228532No Hit
GTCGCTCCGTCGCGGGGGCGGGGAGCGGT391100.12838651859487177No Hit
GTCGCTCCGTCGCGGGGGCGGGG384330.1261641285900462No Hit
CTCTAGCATTACCAGTATTAGAGGC363920.11946413154447899No Hit
CCCGTCCTCGCCGCGCGGCGGCGG344730.11316462427821566No Hit
TGGGGGGGCCGGGCCCCCCCTCCACCGGCG335690.11019706066763615No Hit
CGTCGCTCCGTCGCGGGGGCGGGG318790.10464929241334484No Hit
GCCGAGCGCACGGGGTCGGCGGCGAT315560.10358897930912231No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)