FastQCFastQC Report
Sat 1 Jul 2023
SRR2148115_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2148115_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32291337
Total Bases942.5 Mbp
Sequences flagged as poor quality0
Sequence length21-42
%GC68

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGGCCGGGCCCCCCCTCCCACGGCG2317690.7177435855319338No Hit
TGGGGGGCCGGGCCCCCCCTCCCACGGCGC1615760.5003694953850936No Hit
CTCGCCGCGCGGCGGCGGCGGCGGCGGG1557570.4823491823828787No Hit
TGGGGGGCCGGGCCACCCCTCCCCCGGCG1365850.4229772214139043No Hit
TGGGGGGTCGGGCCACCCCTCCCACGGCG1143190.35402374327207325No Hit
TGGGGGGCCGGGCCACCCCTCCCCAGGCG1136310.35189314087552337No Hit
TGGGGGGCCGGGCCACCCCTCCCAAGGCG1055730.3269390796670946No Hit
TGGGGGGCCGGGCCACCCCTCCCCCGGCGC947820.29352144818283615No Hit
CCGGCGGGCGCCGGCGCGCCCCGCTCGCTCCGCCG880190.27257775049698313No Hit
TGGGGGGTCGGGCCACCCCTCCCACGGCGC850330.2633306883514919No Hit
TGGGGGGCCGGGTCACCCCTCCCACGGCG813950.2520645088185726No Hit
ACGATGCCGACTGGCGCTGCGGCGGCGTT753520.2333505113151555No Hit
CCTCTAGCATTACTAGTATTAGAGGC750870.23252985777578675No Hit
TGGGGGGCCGGACCACCCCTCCCACGGCG730690.22628050365334826No Hit
TGGGGGGCCGGGACACCCCTCCCACGGCG724970.2245091307306353No Hit
TGGGGGGCCGGGCCACCCCTCCCCAGGCGC709350.2196719200570729No Hit
TGGGGGGCCGGGCCACCCCTCCCAAGGCGC666810.2064981081458473No Hit
GTGGGGGGCCGGGCCACCCCTCCCCCGGCGC662320.20510764233763376No Hit
ACGATGCCGACTGGCGCTGCGGCGGCG639160.19793544008413155No Hit
GTGGGGGGCCGGACCACCCCTCCCACGGCGC588630.18228728033156386No Hit
TGGGGGGCCGGGTCACCCCTCCCACGGCGC580010.1796178337242586No Hit
AACGATGCCGCCTGGCGATGCGGCGGCGTT571910.17710942101901822No Hit
ACCTCTAGCATTACTAGTATTAGAGGC535130.16571936925374134No Hit
TGGGGGGCCGGGGCACCCCTCCCACGGCG526670.16309947153937912No Hit
TGGGGGGCCGGGACACCCCTCCCACGGCGC516730.16002124656529398No Hit
GTGGGGGGCCGGGCCACCCCTCCCCCGGCG456280.141301055450259No Hit
GTGGGGGGCCGGACCACCCCTCCCACGGCG453560.14045872427022765No Hit
TGGGGGGCCGGACCACCCCTCCCACGGCGC443350.13729688553930114No Hit
GGAGCCCGGCGGGCGCCGGCGCGCCCCGCTCGCTCCG428560.13271670974788066No Hit
TGGGGGGCCGGGCCAACCCTCCCCAGGCG416540.12899434916553626No Hit
TGGGGGGCCGGGCCATCCCTCCCACGGCG400010.12387532916336044No Hit
TGGGGGGCCGGGCCCCCCCTCCCACGGCC383440.11874392193794887No Hit
GGCGCGCCCCGCTCGCTCCGCCGTCGC383260.11868817943338798No Hit
AAGTGGGAGGCCCCCGGCGCCCCTCCGTCCCC379020.11737513377039792No Hit
TGGGGGGCCGGGGCACCCCTCCCACGGCGC377640.11694777456876437No Hit
TGGGGGGGCGGGCCACCCCTCCCACGGCG371630.11508659427759216No Hit
GTGGGGGGCCGGCCCACCCCTCCCACGGCGC368650.1141637461465284No Hit
GGAGCCCGGCGGGCGCCGGCGCGCCCCGCTCGCTC365780.11327496287936298No Hit
GGAGCCCGGCGGGCGCCGGCGCGCCCCGCTCGCTCC363400.11253792309683555No Hit
TGGGGGGCCGGGCCAACCCTCCCCAGGCGC355070.10995828385798952No Hit
TGGGGGGCCGGGCCACCCCTCCCACGACG349020.10808471634358156No Hit
TGGGGGGCCGGGCCCCCCCTCCCACGGCCC344450.10666947608889653No Hit
AAACGCTGCCGACTGGCGATGCGGCGGCGTT342500.10606559895615347No Hit
CCGCCTGGGAATACCGGGTGCTGTAGGCTT337650.10456364813881816No Hit
GTGGGGGGCCGGGTCACCCCTCCCACGGCGC333570.10330015136877113No Hit
TGCTAAGACCACACAAGTCAAAGCGAA333190.10318247274803147No Hit
TGGGGGGCCGGGCCACCCCTCCCATGGCG327060.101284130787152No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)