FastQCFastQC Report
Mon 3 Jul 2023
SRR2188086.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2188086.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences98760826
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGTGGGCGCCCAGCCGTGCGGAACTACTGCGCCA5376420.5443879134830241No Hit
TGCTTCACTTATCGAATGAAGAGACCCTGTAGGCAC5321360.5388128284791786No Hit
GGCTTGGGCCTCTCGACTTCTCGCGTTCTGTAGGCA4883050.49443187119556903No Hit
GGCTTGGGCCTCTCGACTTCTCGCGTTACTGTAGGC4131540.41833793492168647No Hit
ACCTGCAGCTGGATCCTGTAGGCACCATCAATAGAT4088400.41396980620635965No Hit
TGTCCCGAGGCGCTGAACCTTGATGCTTGGACTGTA3268580.33095915985959856No Hit
ACTGCGCCAACGGGCTGTAGGCACCATCAATAGATC3035980.3074073114779336No Hit
TTGCTTCACTTATCGAATGAAGAGACCCTGTAGGCA2816720.2852062010902987No Hit
TCGCCCAGCCGTGCGGAACTACTGCGCCAACGGGCT2602280.26349313846362526No Hit
TCCCGTGGGCGCCCAGCCGTGCGGAACTACTGCGCC2491340.2522599395837374No Hit
CTGTAGGCACCATCAATAGATCGGAAGAGCACACGT2392550.24225698557847217No Hit
CCCGTGGGCGCCCAGCCGTGCGGAACTTCTGCGCCA2102510.2128890659541466No Hit
ACCTGCAGCTGGATCATTTTCTGTAGGCACCATCAA2089320.21155351616844517No Hit
GTCCCGAGGCGCTGAACCTTGATGCTTGGACTGTAG2008160.2033356829154102No Hit
CGCTCCCGCTTGATCAAAAGAGCGGGGAAACCCTGT1985570.2010483387411118No Hit
TGTCCCGAGGCGCTGAACCTTGATGCTTGGCTGTAG1977310.2002119747358128No Hit
CCCCGTGGGCGCCCAGCCGTGCGGAACTACTGCGCC1941940.19663059521191126No Hit
GGCTTGGGCCTCTCGACTTCTCGCGTTACCTGTAGG1906360.19302795219634958No Hit
CGCTCCCGCTTGATCAAAAGAGCGGGGAAACCTGTA1892200.1915941853301227No Hit
ACCTGCAGCTGGATCTGTAGGCACCATCAATAGATC1872810.189630856266836No Hit
TTTCAATGGGGGATACTCAAACCCATCCAATCTGTA1822060.18449217911563437No Hit
TTTGCTTCACTTATCGAATGAAGAGACCCTGTAGGC1797740.18202966427194525No Hit
CGTTGCTGAACACCTGTAGGCACCATCAATAGATCG1778590.1800906363419844No Hit
TCTTCTTCACGCGAAAGCTTGGAGGTTACAGTCTGT1766490.17886545420347133No Hit
TGCTTCACTTATCGAATGAAGAGACCAATGGTTCTG1753450.17754509262609852No Hit
TCGCCCAGCCGTGCGGAACTTCTGCGCCAACGGGCT1687860.17090379539758002No Hit
TCCTGCAGCTGGATCCTGTAGGCACCATCAATAGAT1602960.1623072694835501No Hit
TTGGATAACTTGGCGAAACGCCAAGCTAATACATGA1566040.15856894514025227No Hit
TTCAATGGGGGATACTCAAACCCATCCAATCTGTAG1521640.15407323547496454No Hit
TGTTGCTTCACTTATCGAATGAAGAGACCCTGTAGG1516060.15350823412513784No Hit
GTCCCGAGGCGCTGAACCTTGATGCTTGGCTGTAGG1329530.1346211907948198No Hit
TCGTCCCGAGGCGCTGAACCTTGATGCTTGGACTGT1292460.1308676782431933No Hit
TTGGATAACTTGGCGAAACGCCAAGCTAATACATGC1267600.12835048584952094No Hit
TCTTCTTCACGCGAAAGCTTGGAGGTTACCTGTAGG1243050.12586468241972784No Hit
GTTGCTGAACACCTGTAGGCACCATCAATAGATCGG1228820.12442382772294756No Hit
AAAACCATGACACCCATGAATTGGGGAACACTGTAG1225520.12408968713971671No Hit
TCTGGATAACTTGGCGAAACGCCAAGCTAATACATG1218360.12336470332882797No Hit
ATCCTGCTGGTGACGCCACTGTAGGCACCATCAATA1173200.11879204007467495No Hit
ACGTCCCGAGGCGCTGAACCTTGATGCTTGGACTGT1154620.1169107273363631No Hit
TGCTTCACTTATCGAATGAAGAGACCTGTAGGCACC1152390.1166849293058768No Hit
TCGTCCCGAGGCGCTGAACCTTGATGCTTGGCTGTA1140950.11552657528400988No Hit
ATGGCTCATTACATCAGACGTAATCTGCCGCCCTGT1076330.10898349513601678No Hit
CCTGCAGCTGGATCATTTTCTGTAGGCACCATCAAT1053500.10667184982839249No Hit
CCCCACTCTCGTCACCACTGTAGGCACCATCAATAG1038450.10514796625941546No Hit
ACGATGAGGCAGCGAAAAGAAATAGAGCTGTAGGCA1023960.10368078533486547No Hit
CCTGCAGCTGGATCCTGTAGGCACCATCAATAGATC1023590.10364332108765474No Hit
TCAATGGGGGATACTCAAACCCATCCAATCTGTAGG1020470.1033274063544183No Hit
TCCCGTGGGCGCCCAGCCGTGCGGAACTTCTGCGCC1017900.103067181718387No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)