FastQCFastQC Report
Sat 1 Jul 2023
SRR2188093.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2188093.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences38236277
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length36
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAGGCACCATCAATAGATCGGAAGAGCACACGT11268392.947041627509917No Hit
ACGCGCCTCCTCATGCTGTAGGCACCATCAATAGAT3244220.8484664968820055No Hit
ACTGTAGGCACCATCAATAGATCGGAAGAGCACACG2769420.7242912274121249No Hit
ACGTTTCTTCTGTAGGCACCATCAATAGATCGGAAG2566490.6712185917054634No Hit
ATCCTGCTGGTGACGCCACTGTAGGCACCATCAATA2392430.6256963772911259No Hit
AAGAAACACGGGAGCGGTTCCTCTGTAGGCACCATC2031970.5314246468085793No Hit
ACGGGAGCGGTTCCTCCCTGTAGGCACCATCAATAG1898390.4964892371712863No Hit
ACGGGAGCGGTTCCTCTGTAGGCACCATCAATAGAT1824440.4771489651045262No Hit
AGCACGTTTCTTCTGTAGGCACCATCAATAGATCGG1605900.4199938189588908No Hit
ACCCTGCTGTCGACGCCACTGTAGGCACCATCAATA1576810.4123858606840828No Hit
TATCCTCAGCCTGTAGGCACCATCAATAGATCGGAA1567450.40993792361112985No Hit
ACGCGCCTCCTCATCTGTAGGCACCATCAATAGATC1515010.3962231992408675No Hit
AAGAAACACGGGAGCGGTTCCTCCCTGTAGGCACCA1260650.3296999862198927No Hit
ACGGGAGCGGTTCCTCCTCTGTAGGCACCATCAATA1127880.2949764172908361No Hit
AGATACAAGAAACACGGGAGCGGTTCCTCTGTAGGC908720.2376591214672914No Hit
ACCTGCAGCTGGATCCTGTAGGCACCATCAATAGAT905820.23690067942545764No Hit
CACGGCTCTGTAGGCACCATCAATAGATCGGAAGAG891950.2332732342115839No Hit
AGAGCATTCGGCTCTGTAGGCACCATCAATAGATCG884320.23127774704634554No Hit
GCCTCCTCATGCTGTAGGCACCATCAATAGATCGGA874950.22882719465600693No Hit
ACGCGCCTCCTCCTGTAGGCACCATCAATAGATCGG845640.221161699398715No Hit
TCAGATACAAGAAACACGGGAGCGGTTCCTCTGTAG810090.21186424609278776No Hit
GCCTCACCGCTGTAGGCACCATCAATAGATCGGAAG763860.1997736338190039No Hit
GCGCCTCCTCATGCTGTAGGCACCATCAATAGATCG747900.19559958727153273No Hit
TCCTCATGCTGTAGGCACCATCAATAGATCGGAAGA745210.19489606689479733No Hit
TAGGCTGGGCTGTAGGCACCATCAATAGATCGGAAG742700.1942396222310033No Hit
ACGGAGCCTACGCGCCTCCTCATGCTGTAGGCACCA723440.1892025209462731No Hit
TCAGATACAAGAAACCTGTAGGCACCATCAATAGAT690010.18045951492610016No Hit
AAGAAACACGGGAGCGGTTCCTCCTCTGTAGGCACC688170.1799782965271436No Hit
CCCCACTCTCGTCACCACTGTAGGCACCATCAATAG686670.17958599891929855No Hit
TCGTCCAGCGAATGAATGAAATTCTGTAGGCACCAT673730.17620177822228875No Hit
TTTCAATGGGGGATACTCCTGTAGGCACCATCAATA672030.17575717426673104No Hit
TTATCCTCAGCCTGTAGGCACCATCAATAGATCGGA652580.1706703819516738No Hit
AACTGTAGGCACCATCAATAGATCGGAAGAGCACAC612000.16005742400077289No Hit
CAGATACAAGAAACACGGGAGCGGTTCCTCTGTAGG606120.15851961737802037No Hit
TACGCGCCTCCTCATGCTGTAGGCACCATCAATAGA606020.15849346420416402No Hit
CGTTGCTGAACACCTGTAGGCACCATCAATAGATCG576010.15064489672987777No Hit
TGCGCCTCCTCATGCTGTAGGCACCATCAATAGATC558720.14612301297011737No Hit
AAGAAACACGGGAGCGGTTCCCTGTAGGCACCATCA545360.14262894894291095No Hit
AAATGGGGGATACTCAAACCCATCCAATCTGTAGGC530050.13862489802550598No Hit
CCCCACTCTTGTCCTGTAGGCACCATCAATAGATCG512520.1340402466484904No Hit
CCCCACTCTCGTCCTGTAGGCACCATCAATAGATCG476030.12449695350831358No Hit
TCCCCGGCACCGGCTGTAGGCACCATCAATAGATCG470510.12305329831144388No Hit
AAATGGGGGATACTCCTGTAGGCACCATCAATAGAT458910.12001953014410896No Hit
AGATACAAGAAACACGGGAGCGGTTCCTCCCTGTAG450010.11769189767089511No Hit
GTTGCTGAACACCTGTAGGCACCATCAATAGATCGG448710.11735190641076275No Hit
ACCCTTCCGTTTGCGCCACTGTAGGCACCATCAATA448680.11734406045860585No Hit
ACAAGAAACACGGGAGCGGTTCCTCTGTAGGCACCA435370.11386307301832758No Hit
TCCTGCAGCTGGATCCTGTAGGCACCATCAATAGAT430970.11271233336864885No Hit
ACGGGAGCGGTTCCCTGTAGGCACCATCAATAGATC430010.112461262899628No Hit
CCCCACTCTTGTCACCACTGTAGGCACCATCAATAG426160.1114543657061591No Hit
TCAGATACAAGAAACACGGGAGCGGTTCCTCCCTGT414890.1085069030125501No Hit
AAGAAACACGGGAGCGGTTCCTCCTGTAGGCACCAT401610.10503376152442875No Hit
CAGATACAAGAAACCTGTAGGCACCATCAATAGATC397360.10392225163553451No Hit
ACCTGCAGCTGGATCTGTAGGCACCATCAATAGATC394170.10308796538951738No Hit
TTTCAATGGGGGATACTCAAACCCATCCAATCTGTA384060.10044387951264187No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)