FastQCFastQC Report
Mon 25 Sept 2023
SRR22197710_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR22197710_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29871436
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGTACGAAATCTCGTAT1815620.6078114222563655TruSeq Adapter, Index 22 (97% over 39bp)
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT500140.16743085267142832No Hit
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT423040.14162024216043714No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT327960.10979050354325115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)