FastQCFastQC Report
Sun 24 Sept 2023
SRR22197712_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR22197712_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36988772
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGATTGTCCATCTCGTAT3335110.9016546967279693TruSeq Adapter, Index 21 (97% over 37bp)
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT615410.16637751585805552No Hit
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT614980.1662612643642238No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT430870.1164867003424715No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)