FastQCFastQC Report
Mon 25 Sept 2023
SRR22197714_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR22197714_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37765044
Total Bases2.8 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTCTAGGAGATCTCGTAT3909931.0353304500320455TruSeq Adapter, Index 8 (97% over 36bp)
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT926080.24522148047808442No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT877370.23232330935454493No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT511530.13545065643244056No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)