FastQCFastQC Report
Mon 25 Sept 2023
SRR22197716_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR22197716_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49196359
Total Bases3.6 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGTGCTTATCTCGTAT2136730.4343268574001584TruSeq Adapter, Index 16 (97% over 37bp)
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT768500.1562107472221674No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT763120.15511717035807468No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT537720.10930077162824184No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)