FastQCFastQC Report
Mon 25 Sept 2023
SRR22197717_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR22197717_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49467467
Total Bases3.7 Gbp
Sequences flagged as poor quality0
Sequence length75
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAGTGCTTATCTCGTAT2199700.44467609388610907TruSeq Adapter, Index 16 (97% over 37bp)
CTTTGTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT765160.1546794381042393No Hit
GTGTTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT752330.15208581429892093No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT533990.10794771440389296No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)