FastQCFastQC Report
Mon 25 Sept 2023
SRR23190698_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23190698_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20586920
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAA2299851.1171413693743406No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG1700280.8259030491205095No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC1348990.6552655763951091No Hit
TTGATGATTCATAATAACTTTTCGAATCGCATGGCCCTGTAGGCACCATC1347300.6544446668078566No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCG997710.48463296112288773No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATA724340.35184476356832395No Hit
TCTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAA626140.30414457335045747No Hit
CAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAAT610390.2964940845935186No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATAG544300.2643911765334494No Hit
TTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCG515280.2502948474079658No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT471420.2289900577648332No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCA465130.22593471971523665No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCA395290.19201026671303914No Hit
TTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGG370450.1799443530163813No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC355990.17292047571953453No Hit
TTGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATA354530.17221128755539927No Hit
TCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG316590.15378211019423982No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATC314510.152771759933006No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATCAATA274020.13310393201119933No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAG270780.1315301171812005No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT261800.12716812422645057No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAATAG246040.1195127780163327No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGCTGTAGGCACCATCAAT244310.11867243861636417No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCTGTAGGCACCATCAATAGATCGG243380.11822069547071637No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGCCTGTAGGCACCATCAATAGA234200.11376155345238627No Hit
TCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGGA233560.11345067644892971No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTGTAGGCACCATCAAT226490.11001645705137049No Hit
CCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGA217790.10579047278563283No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAGA212290.10311887353717797No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)