FastQCFastQC Report
Mon 25 Sept 2023
SRR23190700_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23190700_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22325379
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG10253744.592862678837389No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAG4455781.9958362185027185No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAA2967131.3290390277361026No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTTCTGTAGGCACCATCAATAGA1624700.7277368057223127No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATA1043640.46746798788947774No Hit
TTGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATA1022280.45790040115332425No Hit
TCTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAA997550.44682332156600796No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAGA973100.4358716597823491No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT874030.3914961533239817No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCA787020.35252257083743127No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACATCAATAGA744950.33367854583790046No Hit
CAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAAT726790.3255443054292606No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATA633340.28368611345858896No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCA616620.27619687889733024No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTACTGTAGGCACCATCAATAG562660.25202707644963157No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATAG510200.228529155092955No Hit
ACTATGCCGACTAGGGATCGGGTGGTGTTCTGTAGGCACCATCAATAGAT506310.22678674346357122No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTGTAGGCACCATCAAT462480.2071543779839079No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC459530.20583301183823127No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATC457340.20485206544533915No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGACCATCAATAGA456600.2045206041071016No Hit
CTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA448680.20097307194650535No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGCTGTAGGCACCATCAAT435710.19516354011280165No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGCCTGTAGGCACCATCAATAGA426080.19085006350844033No Hit
TCCGATATAGTGTAACGGCTATCACATCACGCTGTAGGCACCATCAATAG419760.1880192045116009No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTCTGTAGGCACCATCAATAGA418030.18724430165328884No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATCAATA378820.16968132993397333No Hit
TGCCAGATCGGGGTTCAATTCCCCGTCGCGGACTGTAGGCACCATCAATA365410.16367471298023653No Hit
TGTATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG364820.1634104397511012No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGCACCATCAATAGA339890.1522437760183153No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAATAG333130.14921583190144275No Hit
AAACTATGCCGACTAGGGATCGGGTGGTGTTCTGTAGGCACCATCAATAG329360.14752717075934074No Hit
TGCCCGCGCAGGTTCGAGTCCTGCAGTTGTCGCCACTGTAGGCACCATCA318660.14273441897671704No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATAATAGA286200.12819491216700063No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAA283300.1268959420576914No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACATCAATAGA272450.12203600216596547No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACATCAAT265890.11909764219456252No Hit
TCCGATATAGTGTAACGGCTATCACATCACGCCTGTAGGCACCATCAATA257850.11549635954668451No Hit
CTCCACACAATATAGATGGATACGAATAAGGCGTCCTGTAGGCACCATCA256850.1150484388193365No Hit
ACCCACTAATAGGGAACGTGAGCTGGGTTTAGCTGTAGGCACCATCAATA242100.10844160809095335No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACTATCAATAG241750.10828483583638154No Hit
TTGCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATA237900.10656034103609172No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCACAATAGA230970.10345625039557No Hit
TTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCG230300.10315614350824681No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCCCATCAATAGA228810.10248874162449828No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATC226010.10123456358792386No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGTACCATCAATAG225380.10095237352969462No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCTCAATAGA224010.10033872213322784No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)