FastQCFastQC Report
Mon 25 Sept 2023
SRR23190701_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23190701_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43191042
Total Bases2.1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAA8786322.034292203462005No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC5479231.268603336775251No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT4622651.0702798047798894No Hit
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG4007220.9277896097065683No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCA3505160.8115479131066113No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAG3298980.7638111625091147No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCA2574970.5961814952276446No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATC2199080.5091518745947365No Hit
CAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAAT1996260.4621930630893323No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCG1624510.3761219745520379No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGCTGTAGGCACCATCAAT1526430.35341356200667723No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAGA1494930.346120383018312No Hit
TTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCG1325920.3069895836270864No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATA1267530.2934705766070659No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATC1261130.2919887878602234No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATC1235620.28608247052710606No Hit
TCTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAA920750.21318077947737402No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTTCTGTAGGCACCATCAATAGA773470.17908111594066195No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATAG769230.17809943089587882No Hit
TGCCAGATCGGGGTTCAATTCCCCGTCGCGGACTGTAGGCACCATCAATA745950.17270942432923939No Hit
CAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAA728410.1686483970449243No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGCCTGTAGGCACCATCAATAGA725330.16793528621050635No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGCTGTAGGCACCATCAA663100.15352720594238037No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATAGA656730.15205236308028874No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAATAG654320.15149437700530588No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATA645060.14935041391221818No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATCAATA636540.14737778264298415No Hit
TCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGG631770.14627338696760314No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAAT628900.14560889732644097No Hit
TGCCCGCGCAGGTTCGAGTCCTGCAGTTGTCGCCACTGTAGGCACCATCA599630.13883202910455367No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACATCAAT593300.1373664474221298No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGAT565840.13100864758020886No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTCTGTAGGCACCATCAATAGA553770.1282140866154607No Hit
CCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATCGGA531230.1229954118726749No Hit
CAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATCA502790.11641071312889371No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGCTGTAGGCACCATCAATAG473750.10968709669009606No Hit
TCCGATATAGTGTAACGGCTATCACATCACGCTGTAGGCACCATCAATAG467730.10829328915009737No Hit
TTCCACGTTCTAGCATTCAAGGTCCCCTGTAGGCACCATCAATAGATCGG439900.10184982339624961No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAATA435970.10093991249389167No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)