FastQCFastQC Report
Mon 25 Sept 2023
SRR23190704_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23190704_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21477367
Total Bases1 Gbp
Sequences flagged as poor quality0
Sequence length50
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATAG2303301.0724312714868633No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAA2147480.9998804788315065No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAG1955760.9106144156311153No Hit
GCCAAGGACGTTTTCATTAATCAAGAACGACTGTAGGCACCATCAATAGA1507080.7017061262677124No Hit
TTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGATC529510.24654325644293362No Hit
CAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAAT476500.2218614600197501No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCA466940.21741026262669907No Hit
TTTTCCACGTTCTAGCATTCAAGGTCCCACTGTAGGCACCATCAATAGAT458910.21367144305910493No Hit
AACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATA423270.19707723018375575No Hit
TCTGCTGAGATTAAGCCTTTGTTGTCTGATTTGTCTGTAGGCACCATCAA403730.1879792807004695No Hit
TCCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCA402780.18753695459969558No Hit
ACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACCATCAATAG392970.18296935560117775No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGAACTGTAGGCACCATCAATA383920.17875561748327903No Hit
TTGAATGGCTTAGTGAGGCCTCAGGATCTGCTCTGTAGGCACCATCAATA378670.1763111837684759No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCATCTGTAGGCACCATCAAT308990.14386772829276515No Hit
AACTATGCCGACTAGGGATCGGGTGGTGTTCTGTAGGCACCATCAATAGA307110.14299238821965468No Hit
TTGACCTCAAATCAGGTAGGAGTACCCGCTGAACTGTAGGCACCATCAAT268100.1248290817026128No Hit
TCGGTGCCCGAGTTGTAATTTGGAGAGGGCCTGTAGGCACCATCAATAGA263190.12254295417124454No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGCTGTAGGCACCATCAAT257810.12003799162159869No Hit
AGCGGAGAATTTGGACAAACTTGGTCATTTCTGTAGGCACCATCAATAGA248830.11585684595323067No Hit
CCAACGGGGCCTTTCCTTCTGGCTAACCTTGAGTCTGTAGGCACATCAAT239810.11165707602798797No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCCTGTAGGCACCATCAATA225790.10512927399340896No Hit
TGCCAAGGACGTTTTCATTAATCAAGAACGCTGTAGGCACCATCAATAGA218140.10156738486612443No Hit
CGGGGCCTTTCCTTCTGGCTAACCTTGAGTCCTGTAGGCACCATCAATAG216550.10082707065535547No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)