FastQCFastQC Report
Mon 25 Sept 2023
SRR23678226_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678226_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences130074058
Total Bases4.2 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC73

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC52495964.035851637687816No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG41991193.2282524775232275No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG25638361.9710586718221705No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC20533761.5786206962190723No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC20183111.5516629764868255No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG16887601.2983065385720494No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG16834961.2942596132427882No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT14002691.0765167332597558No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG13942821.0719139707319656No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC12354940.9498388986987705No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC10453200.8036344956655385No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG9069080.6972243458415052No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC9065940.6969829449005119No Hit
TCTCTCCCCCGCTCCCCGTCCTCCCCCC8899960.6842225219113253No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC8848790.6802886091245035No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC6643130.5107190551401111No Hit
TCTCCCCCGCTCCCCGTCCTCCCCCC6175400.47476030923860313No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG5591660.4298827979980451No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG5395650.41481369021330905No Hit
CCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC5311720.4083612121949789No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC4896280.3764224838745325No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC4716690.3626157338767735No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT4587200.35266063583562524No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG4518050.3473444335841356No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT4382490.33692267830992095No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG4199140.32282686221721474No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3977500.3057873384714422No Hit
CCGGCGGCGTCCGGTGAGCTCTCGCTGGCC3604070.27707830872778644No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT3591400.27610424824295093No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC3541780.27228949834101435No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCC3313480.2547379585866384No Hit
GTATAGTGGTGAGTATCCCCGCC3299520.2536647238298662No Hit
TCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC3240850.24915421643876134No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG3184480.24482053139297No Hit
TCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC3174610.24406173289373354No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG3152290.24234578735138715No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC3056390.23497306434462129No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG3004500.23098379847578832No Hit
TTAAAACAAAGCATCGCGAAGGCCCGCG2973460.22859746560686223No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2973130.22857209544427376No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG2943130.22626571702714157No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG2652730.20393997394930202No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTT2501630.1923235146550129No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG2463330.18937903820914082No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT2444900.18796215306821595No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG2422210.18621776219205832No Hit
CTCTCCCCCGCTCCCCGTCCTCCCCCC2417360.18584489768128862No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC2409580.18524677687844568No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCCC2340090.1799044356715618No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTCT2300390.1768523282328902No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGC2246230.1726885463971609No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGC2234860.1718144289770678No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2178810.16750534530105918No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT2177710.167420778092431No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT2110520.16225525923086062No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC2072870.15936075431735974No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA2058850.1582829068037533No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG2039000.1567568530844175No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1997170.15354099277812952No Hit
TCCCGGGGCTACGCCTGTCTGAGCGTCGCT1938280.14901357194529902No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1923070.14784423808781302No Hit
ATTAAAACAAAGCATCGCGAAGGCCCGCG1900670.146122142203021No Hit
TCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1899650.14604372533683851No Hit
TTAAAACAAAGCATCGCGAAGGCCCGCGG1854710.1425887704679745No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGC1771700.13620702138776972No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1742740.13398059742243146No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCC1738170.13362925911022167No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1715900.13191715753190386No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGA1673640.12866823913497033No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG1670920.128459127491817No Hit
CCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1647930.12669167283148805No Hit
TCGGGTGTTGACGCGATGTGATTTCTGCCCAGTG1562530.12012618227071842No Hit
TCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1550700.11921670038156262No Hit
TGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG1542890.11861627320030256No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGG1531660.11775291887948941No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1518650.11675271943925976No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1500630.115367354803369No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1482840.11399967240200964No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1435290.11034406261085511No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC1430860.11000348739792526No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCC1410000.1083997856052127No Hit
TCCGGATGTGCTGACCCCTGCGATTTCCCCA1394310.10719354969305256No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG1390250.106881419813934No Hit
TCTCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1387760.10668999040531202No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCC1378520.1059796258528353No Hit
CGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG1376550.1058281736701103No Hit
TTAAAACAAAGCATCGCGAAGGCCCGC1367720.10514932962266772No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTT1360420.1045881108744989No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC1323600.10175741576387201No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1314540.10106088948189806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)