FastQCFastQC Report
Mon 25 Sept 2023
SRR23678227_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678227_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92397755
Total Bases3.1 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC72

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG32079513.4718927965295263No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC31294163.386896142660609No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG16757401.8136154931469928No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG12791071.384348569940904No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT11841661.281596073411091No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC11519781.2467597291730736No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG11420141.2359759173802438No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC11039211.194748725226062No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC8018570.8678316913652286No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC7646530.8275666437999495No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG6369820.6893912086933282No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC5770520.6245303254391841No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG4955390.5363106495390499No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC4646840.5029169810456975No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC4163620.4506191735935575No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCC4141380.44821218870523427No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG4008600.433841709682232No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT3977440.4304693333728725No Hit
GTATAGTGGTGAGTATCCCCGCC3392720.36718641053562395No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC3374170.3651787859997248No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG3370600.36479241297583476No Hit
TCTCCCCCGCTCCCCGTCCTCCCCCC3295290.3566417820432975No Hit
CCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC2964270.32081623628193134No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG2941900.318395181787696No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC2895660.31339073119254895No Hit
TCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC2895310.3133528514843245No Hit
TCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC2849600.30840576159020316No Hit
ATCCCGGACGAGCCCC2726620.2950959143974872No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT2719860.2943642948900652No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2618450.2833889200013572No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA2467830.26708765813628266No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG2407310.26053771544557547No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC2389160.25857338200479No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTCT2220920.24036514739995576No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT2209350.23911295247379116No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT2072940.22434960676263183No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2055300.22244046946811638No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG2024550.21911246653124852No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1991340.21551822335943116No Hit
TCTCTCCCCCGCTCCCCGTCCTCCCCCC1966460.21282551724335724No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1898640.20548551206682458No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1874460.2028685653671997No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1811440.19604805333203174No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1758860.19035743887933207No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1755050.1899450911983738No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1646880.17823809680224373No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG1565200.16939805518002032No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1543450.16704410188321134No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG1540080.1666793744068782No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTT1475270.1596651347210763No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGA1467190.15879065459977898No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCC1455580.15753413056410298No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1425260.15425266555448236No Hit
TCCGGATGTGCTGACCCCTGCGATTTCCCCA1422290.15393122917326293No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1343330.14538556699781288No Hit
TCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1291750.13980318028289757No Hit
TTTGGTCTAGGGGTATGATTCTCGCTT1291530.13977937018058503No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCA1287930.13938975032456144No Hit
GGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC1280520.13858778278757963No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1275500.13804447954390234No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC1270540.1375076699644921No Hit
TGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG1266430.13706285396219853No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1252400.1355444188010845No Hit
CGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG1244170.13465370451911954No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC1221100.13215689060843525No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA1217480.131765106197656No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG1209800.1309339171714724No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1184650.1282119895661967No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC1171250.12676173787988682No Hit
TCCCCGTACGGGCCACCA1165590.12614916888402755No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1139530.12332875403736812No Hit
TCTCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1133150.12263826107030414No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1105260.11961978946349941No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1099670.11901479640928506No Hit
TTCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1046290.11323759976635794No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCAC1020900.11048969750401404No Hit
GTCTAGGGGTATGATTCTCGCTT1020350.11043017224823266No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGC1011360.1094572048855516No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1005860.10886195232773783No Hit
CTCTCCCCCGCTCCCCGTCCTCCCCCC996070.10780240277482932No Hit
TCGGGGCGGCAGGGGCCGGCGGCGGCCCGCCGCGGGGCC982040.1062839676137153No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG971020.10509129794333207No Hit
GCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG951880.10301981904214015No Hit
AGGGGCCCGGGGCGGGGTCCGCCGGC951850.10301657221000661No Hit
ATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG941670.10191481383936221No Hit
TTTGTATAGTGGTGAGTATCCCCGCC933560.10103708688593137No Hit
CCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT926630.10028706866308604No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)