FastQCFastQC Report
Mon 25 Sept 2023
SRR23678228_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678228_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences79573484
Total Bases2.7 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC26088713.2785682728181165No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG25059533.1492312187813716No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC12180791.5307599199753525No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG12125921.523864406892125No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC11107231.3958456311904102No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG10312021.2959115878349627No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG6857390.8617682241989052No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT5945510.7471722615538613No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC5695010.7156919257173658No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG5455300.6855675692169014No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCC4128030.5187695438847444No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC3607410.4533432267462363No Hit
GTATAGTGGTGAGTATCCCCGCC3566480.4481995535095585No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC3195010.40151691736910755No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG3161760.39733838975807567No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG3113390.3912597316965536No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG3108050.3905886538787217No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2944790.37007176913354706No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2821490.35457665772181096No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC2807010.35275695607345786No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG2795840.35135322213615783No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG2680510.336859700651036No Hit
ATCCCGGACGAGCCCC2679790.33676921824863165No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG2376390.29864093923548707No Hit
TCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC2328400.29261003577523387No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC2270520.285336255981955No Hit
TCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC2152460.27049965538771686No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG2138180.2687050877400316No Hit
TCTCCCCCGCTCCCCGTCCTCCCCCC2100650.2639886925147075No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1996220.25086497406598407No Hit
GTCTAGGGGTATGATTCTCGCTT1972480.24788156818670903No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1913810.24050850909079208No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC1865050.23438083972796767No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCT1845440.23191645096248392No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1842160.23150425335153102No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC1838320.2310216805387081No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1832220.23025509351833834No Hit
ACCTCAGAGGGGGCACCA1786670.22453082486623308No Hit
TCCCCGTACGGGCCACCA1726120.21692150616403824No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCC1711740.2151143715160191No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1681440.2113065704148382No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT1621180.20373369601361177No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1604180.2015973059568436No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCC1584050.19906756878962342No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG1572500.19761608025105448No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC1565320.19671376962707826No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1522580.19134263368435644No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTCT1470980.18485806151204842No Hit
TTTGGTCTAGGGGTATGATTCTCGCTT1447830.18194880093474353No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1379780.17339695720750395No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGA1378050.17317954810172695No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCAC1361560.17110724974666183No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA1332530.16745904954972188No Hit
TCCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG1297670.16307819323331377No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1245950.156578540660605No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCA1245270.15649308505833426No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC1229310.15448739180503898No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1213290.15247415835154332No Hit
TCCCGGGTTTCGGCACCA1181200.1484414079443851No Hit
TCCGGATGTGCTGACCCCTGCGATTTCCCCA1161390.1459518851782335No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1112270.1397789746142069No Hit
TCTCTCCCCCGCTCCCCGTCCTCCCCCC1100270.13827093457413528No Hit
CGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG1098990.13811007696986097No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGG1054800.13255671952229714No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTT1054140.13247377732009322No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1020040.12818843020622298No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG991550.12460809181108622No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT958860.12049993940192438No Hit
TGAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG958370.12043836110028813No Hit
TCTCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC958020.12039437659911938No Hit
TCCCGGGTTTCGGCACC954460.11994699138723144No Hit
TTTGTATAGTGGTGAGTATCCCCGCC954260.1199218573865636No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGC942530.11844774824739358No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCC939040.11800915993573939No Hit
GAGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGTC927800.11659662909820562No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA925290.11628119738982398No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG920860.11572447927503088No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCC906610.11393368172744579No Hit
TTCGTATAGTGGTGAGTATCCCCGCC887670.1115534918641994No Hit
TTGGTCTAGGGGTATGATTCTCGCTT881110.11072909664229355No Hit
GTCTAGGGGTATGATTCTCGCTTG870770.10942966880776515No Hit
TCCCGGGTTTCGGCAC865510.10876864459020041No Hit
TCCTCGTTAGTATAGTGGTGAGTATCCCCGCC833080.10469316638190682No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC823570.10349804465015006No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG818990.10292247603485603No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC813610.10224637141689058No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG801570.10073330457668536No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)