FastQCFastQC Report
Mon 25 Sept 2023
SRR23678229_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678229_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33624423
Total Bases1.1 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC14251224.238353770412655No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG13229993.934637034515061No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG5839021.736541322954449No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC5700471.6953361549133497No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC5131561.5261406864885088No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG4873071.4492650178710873No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2756420.8197672269350168No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG2539250.7551802450260633No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC2477620.7368513059688786No Hit
AGACAGACTGACTACTCACACGAACAGGAT1702370.506289728748654No Hit
AGACAGACTGACTACTCACACGAACAGGAG1667070.49579140733507904No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1452370.43193901052220285No Hit
TGACAGACTGACTACTCACACGAACAGGAG1411880.4198971681982469No Hit
TGACAGACTGACTACTCACACGAACAGGAT1407170.4184964006668605No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCC1345310.4000990589489075No Hit
AGACAGACTGACTACTCACACGAACAGGAA1314070.3908081931993301No Hit
AGACAGACTGACTACTCACACGAACAGGAC1312680.39039480320599107No Hit
TCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1278170.3801314300620118No Hit
TGACAGACTGACTACTCACACGAACAGGAC1159440.34482078696190566No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG1158270.3444728256006059No Hit
TGACAGACTGACTACTCACACGAACAGGAA1149790.34195084923836466No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG1136440.33798052088507213No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1116470.3320413855131432No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1116220.33196703479491674No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1090770.3243981316794641No Hit
TCCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGG1039070.309022403150234No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG958970.28520043303047904No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCA921020.2739139940037038No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCAC903970.26884327502065986No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA890210.26475101148947594No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG854340.2540831704383448No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG811180.2412472624437303No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC766520.22796525013975708No Hit
GTATAGTGGTGAGTATCCCCGCC717170.21328841836185558No Hit
TCTCCCCCGCTCCCCGTCCTCCCCCC709090.2108854031487767No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG702390.20889280390030784No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG666340.19817143033205356No Hit
ACCTCAGAGGGGGCACCA663500.1973268061730011No Hit
ACAGACTGACTACTCACACGAACAGGAT643480.1913728006574269No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGG620890.1846544697584848No Hit
ACAGACTGACTACTCACACGAACAGGAG613890.18257264964814415No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG597650.17774282699215388No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCT587240.17464686308520447No Hit
TCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC574480.17085200242692639No Hit
CGACAGACTGACTACTCACACGAACAGGAG548380.16308978744408492No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG545840.16233438414690418No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCC529590.15750158746218487No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCA528010.15703169092299368No Hit
TCTCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC527860.1569870804920578No Hit
ATCCCGGACGAGCCCC523450.15567553382254323No Hit
CGACAGACTGACTACTCACACGAACAGGAT517880.15401899982045789No Hit
ACAGACTGACTACTCACACGAACAGGAA498520.14826128020100152No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCC497520.1479638773280957No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG487080.1448589913349591No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCT483240.14371696430300082No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA471080.14010054536846625No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC470120.13981503861047667No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCG460420.1369302307432904No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCG456910.135886346659391No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC456750.13583876219972607No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCA453350.13482759243184636No Hit
ACAGACTGACTACTCACACGAACAGGAC452030.1344350206396107No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCC445260.13242160319003837No Hit
TCGGGGCGGCAGGGGCCGGCGGCGGCCCGCCGCGGGGCC442180.1315056023414885No Hit
CGACAGACTGACTACTCACACGAACAGGAC441870.13141340745088773No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGC435760.12959627589743325No Hit
TTGACAGACTGACTACTCACACGAACAGGAT430220.1279486639815351No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT424290.12618506494520368No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG422050.12551888250989465No Hit
CTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC418310.12440659576522697No Hit
TTGACAGACTGACTACTCACACGAACAGGAG417440.12414785526579891No Hit
CGACAGACTGACTACTCACACGAACAGGAA411700.12244076277531958No Hit
TCCCGGGTTTCGGCACCA408880.12160208667372523No Hit
TCGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG384610.11438411894830135No Hit
TCCCCGTACGGGCCACCA383120.11394098866767172No Hit
GGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG381150.11335510500804727No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG377120.1121565714302369No Hit
GCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG375490.11167180474740042No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC373480.11107402497285976No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG373310.11102346648446577No Hit
GGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG367200.10920633493101131No Hit
TCAGGTCTCTCACTCACTACACACTCTCG364870.10851338623714078No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCC357700.10638100763840617No Hit
TTGACAGACTGACTACTCACACGAACAGGAA353080.10500700636558134No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG346310.10299358891600907No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG345190.10266049769835454No Hit
TCAGGTCTCTCACTCACTACACACTCTCT344950.10258912100885717No Hit
TCGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCA342470.10185156188405077No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)