FastQCFastQC Report
Mon 25 Sept 2023
SRR23678230_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678230_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences135527534
Total Bases4.6 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC71

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC92062596.792906746167167No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG79028005.831139818422432No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC32436062.3933188365989158No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG28587652.109361039506555No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC24248451.7891899368581443No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG22630281.6697920586380623No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG16337871.2055019019234865No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC12688000.9361935265493726No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG12390200.9142201318294481No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG5856640.4321365428223611No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG5365160.39587232510258763No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCC5029650.3711164699565772No Hit
TCCCCGTACGGGCCACCA4989070.368122244443701No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG4373840.3227270408388011No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG4262250.3144932896071141No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG4202150.310058766361085No Hit
ACCTCAGAGGGGGCACCA4190290.3091836674310034No Hit
TCCCGGGTTTCGGCACCA3913690.2887745304950358No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG3802990.28060644857597716No Hit
GTATAGTGGTGAGTATCCCCGCC3577560.26397292818741913No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG3485370.2571706203995418No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG3480130.25678398309822414No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC3471180.256123600684714No Hit
ATCCCGGACGAGCCCC3272580.24146975182179586No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG3097180.2285277322318873No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG3000940.22142659217867863No Hit
TCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC2954680.21801326363689316No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGG2747380.20271747879659643No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCC2693530.19874411645385653No Hit
TCTCCCCCGCTCCCCGTCCTCCCCCC2667950.19685667710887442No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG2623640.19358723076891518No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG2620330.19334299995453325No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG2617820.1931577977357723No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGG2303960.16999940395875573No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC2182200.16101525170523653No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCAC2167220.15990994125223293No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC2117180.15621770259613812No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA2062430.1521779330833246No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG2060500.1520355265963889No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCA2043430.1507760039373254No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1988870.14675025371597183No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1929940.14240205979103848No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1813920.13384143771110008No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC1794290.13239302354604932No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCG1751000.12919883866550688No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG1734490.1279806360233781No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCC1711650.126295369618398No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCT1668150.12308568973150504No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG1657170.12227552225660655No Hit
TCCCGGGTTTCGGCACC1639150.12094590314024307No Hit
ATCCCAGCGGGGCCTCCA1630160.12028256929695186No Hit
TCGGGGCGGCAGGGGCCGGCGGCGGCCCGCCGCGGGGCC1625040.11990478628497733No Hit
ATCTCGCTGGGGCCTCCA1613770.11907322094416622No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCA1586240.11704189939735789No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1564860.11546436017938613No Hit
GCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1554690.11471395915755392No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGC1546540.11411260533966479No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCG1504050.11097744905474337No Hit
TAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCC1503640.1109471968994876No Hit
TCGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG1493530.11020122302232696No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC1486340.10967070351918305No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1479630.10917560117341175No Hit
TCGGCACTGGCAATTTTTGACAGTCTCTACGGAGACTG1445270.10664032299148894No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCT1443680.10652300365769217No Hit
TCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1438850.10616661851163027No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT1435150.10589361125688304No Hit
GTCTAGGGGTATGATTCTCGCTT1427990.10536530532607492No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCGT1425670.10519412239877396No Hit
AGACAGACTGACTACTCACACGAACAGGAT1424670.10512033665424768No Hit
AAGTCGTCTCATCAGGTCTCTCACTCACTACACACTCTCA1372310.10125691507085195No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1369490.10104883927128787No Hit
ATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG1357070.10013242032427153No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)