FastQCFastQC Report
Mon 25 Sept 2023
SRR23678231_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678231_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences39603146
Total Bases1.3 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC15762433.980095419692163No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG14746453.723555194327238No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC7043121.7784243706295455No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG6791731.7149470903144917No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG5921691.4952574727270405No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC5812441.4676712804583758No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC3570190.9014915128207238No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG3528980.8910857738423104No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG2782850.7026840746439689No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCCC1884610.4758738106311049No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1858400.46925564953854926No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA1602440.4046244204942709No Hit
TGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1510620.38143939372897295No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1498840.37846488256261257No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCG1401830.3539693538488079No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCG1367970.34541952803446474No Hit
GTATAGTGGTGAGTATCCCCGCC1192350.30107456614684097No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGAG1177090.2972213369109616No Hit
ACCTCAGAGGGGGCACCA1110580.28042721656506786No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGG1108930.2800105829976235No Hit
TCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC1108730.27996008195914535No Hit
TCCCCGTACGGGCCACCA1108550.2799146310245151No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1059160.2674433995723471No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC1058410.2672540206780542No Hit
TAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG1048390.2647239186503012No Hit
TCTCCCCCGCTCCCCGTCCTCCCCCC1002690.25318443135805424No Hit
ATCCCGGACGAGCCCC994670.2511593397150822No Hit
AGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG881280.22252777594992074No Hit
TCCCGGGTTTCGGCACCA880650.22236869767871473No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCAC862610.21781350400798968No Hit
TCCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG849000.21437690833955464No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG809660.2044433540709114No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGG793970.20048154760230413No Hit
CCCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG775300.19576727566037302No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAG762470.19252763404200263No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGC761080.1921766518245798No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCCGGGCA757080.1911666310550177No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA739520.1867326398766401No Hit
CCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG736380.18593977357253386No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA735560.18573271931477364No Hit
TCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC707930.17875600084902346No Hit
TCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG694370.17533203044020795No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG674150.17022637545007158No Hit
CGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC649700.16405262349612326No Hit
CGGCGGCGGGGGCACGGTCCCCCGCGAGGGGGGCCC641380.1619517802954341No Hit
AGGGGGGTCTCCCCCGCGGGGGCGCGCCGGCG633480.15995698927554897No Hit
ATTGAAAGTCAGCCCTCGACACAAGGGTTTGT598060.15101325536107663No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC593770.14993000808572127No Hit
TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGC568690.14359717786056694No Hit
ATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCG560240.141463508984867No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC546900.13809508971837742No Hit
GGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG541590.13675428714678373No Hit
GCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCG531650.13424438553442192No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG522580.1319541634394399No Hit
ATCTCGCTGGGGCCTCCA520720.13148450378159351No Hit
TCCCGGGTTTCGGCACC516090.1303154047408254No Hit
GCATGGGTGGTTCAGTGGTAGAATTCTCGCC493640.12464666317165812No Hit
TCGGGGCGGCAGGGGCCGGCGGCGGCCCGCCGCGGGGCC488050.12323515914619511No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCCA483710.12213928661122023No Hit
TCTCTCCCCCGCTCCCCGTCCTCCCCCC482580.12185395574381894No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCC481750.1216443764341348No Hit
TCTCTCTCTCTCTCTCCCCCGCTCCCCGTCCTCCCCCC479420.1210560393358649No Hit
ATCCCAGCGGGGCCTCCA475150.11997784216435735No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGAGCC472560.1193238537160659No Hit
GTCTAGGGGTATGATTCTCGCTT464410.11726593639808314No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCTTG463240.11697050532298622No Hit
ACGCGGGAGACCGGGGTTCGATTCCCCGACGGGGA459210.11595290939765239No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCC453860.1146020066183631No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCC447300.11294557255628127No Hit
AGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGGA446030.11262489096194529No Hit
TTTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT444350.11220068223872923No Hit
TCCCGGGTTTCGGCAC442280.11167799649048082No Hit
TTTGGTCTAGGGGTATGATTCTCGCTT433510.10946352595321594No Hit
GCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC429470.10844340497595822No Hit
AGGGGCCCGGGGCGGGGTCCGCCGGC428180.10811767327777444No Hit
TTCCGGCGGCGTCCGGTGAGCTCTCGCTGGCCCT425960.1075571117506675No Hit
TCCGGATGTGCTGACCCCTGCGATTTCCCCA417710.10547394391344567No Hit
TCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTT412900.10425939393804723No Hit
TGATTCAACCCGGCGGCGGGTCCGGCCGTGTCGGCGG409290.10334785019351746No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)