FastQCFastQC Report
Mon 25 Sept 2023
SRR23678243_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR23678243_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences82033859
Total Bases2.4 Gbp
Sequences flagged as poor quality0
Sequence length16-89
%GC70

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCTTCTGGCGCCAAGCGCCCGGCCG26749913.260837698736079No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCG14062651.714249478376971No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC12509211.524883767811045No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCCGC9614661.1720355615600138No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCC7523720.917148125385641No Hit
AGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC7261250.8851528001382941No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG7153020.8719594673706622No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG6682460.8145977869942703No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCG5381170.6559693845440089No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCC5333390.6501449602657361No Hit
TCGCTTCTGGCGCCAAGCGCCCGGCC4842340.5902855307587078No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCC4596720.5603442354211327No Hit
CCCCCGCCCCTTGCCTCTCGGC4543520.5538591083469571No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGC4347670.5299848200485119No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG4248710.5179215084834665No Hit
ATTGATCATCGACACTTCGAACGCA4144120.5051718949366992No Hit
AGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTCCC4112810.5013551782319542No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGCCGC4057130.4945677369633434No Hit
CCCCCCGCGGGGGCGCGCCGGC3843690.4685492121003353No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCCC3809800.4644179911126697No Hit
CCCCCGCCCCTTGCCTCTCGG3790970.4621225974508892No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCG3624290.44180415796360384No Hit
TAGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC3529640.4302662392122745No Hit
CGCTTCTGGCGCCAAGCGCCCGGCCG3328740.4057763514453221No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCC3004450.3662451134963674No Hit
CCTCGGTTGGCCTCGGATAGCCGGTCCCC2921710.3561590342836365No Hit
TGAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC2793030.3404728284207622No Hit
TCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2583180.31489192773437613No Hit
TCGGGTCGCGCCGTCGGGCCCGGGGG2469970.3010915285601766No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTC2450210.2986827670754828No Hit
TCGCTTCTGGCGCCAAGCGCCCGGC2382180.2903898498789384No Hit
TCGTCCGACCTGGGTATAGGG2285020.27854595990662834No Hit
CCCCCGCCCCTTGCCTCTCGGCGCCC2207120.26904988097658555No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG2121500.2586127272154782No Hit
TCCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG2074390.25286997653005694No Hit
CCCCCCCGCGGGGGCGCGCCGGC2060010.25111704180587185No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCT2049810.24987365278037205No Hit
TAGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTCCC1971010.24026786305396167No Hit
CCCCCCCCGCGGGGGCGCGCCGGC1965310.23957302801029998No Hit
TGCCTCGGTTGGCCTCGGATAGCCGGTCCCC1902450.2319103383884452No Hit
CCCCCGCCACGCAGTTTTATCCGGTAAAGCG1892420.23068767251337038No Hit
GCCTCGGTTGGCCTCGGATAGCCGGTCCC1848880.22538010798687408No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1848220.22529965340287111No Hit
TCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1819520.2218010980075922No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG1802570.21973487800933514No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCG1790230.21823062109025004No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACC1782740.21731758346270166No Hit
TTGGCGCTAAACCATTCGTAGACGACCTGCTT1775940.21648865744570178No Hit
AGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTC1754920.21392630084609332No Hit
TCGGCGGCGTCCGGTGAGCTCTCGCTGGCC1698720.20707547111735897No Hit
TTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1698470.20704499589614578No Hit
TCGCTTCTGGCGCCAAGCGCCCGG1690650.2060917309765959No Hit
GGGGTCGCGCCGTCGGGCCCGGGGG1656020.20187030333413913No Hit
TGGCGGCGTCCGGTGAGCTCTCGCTGGCC1639480.19985406269867179No Hit
TTGGCGCTAAACCATTCGTAGACGACCTGCTTC1623380.1978914584525397No Hit
TTCGGTTGGCCTCGGATAGCCGGTCCCC1604770.19562288298542677No Hit
TCGGTTGGCCTCGGATAGCCGGTCCCC1582650.1929264354124801No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCC1545460.18839294150479988No Hit
CTCGGTTGGCCTCGGATAGCCGGTCCCC1541270.1878821767972661No Hit
TTCTCGCTTCTGGCGCCAAGCGCCCGGCCG1518330.18508577049874003No Hit
AGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTCC1472010.1794393215123526No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGGC1469570.17914188335331147No Hit
ACGATGCCGACCGGCGATGCGGCGGCG1465990.178705478185538No Hit
ATTGATCATCGACACTTCGAACGCAC1376690.1678197291681719No Hit
CCATCTGTGGGATTATGACTGAAC1326950.16175637915558744No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1322160.16117247391714196No Hit
CAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC1315550.1603667090682641No Hit
AGCCTCGGTTGGCCTCGGATAGCCGGTCCC1294410.1577897243624733No Hit
TCTCGCTTCTGGCGCCAAGCGCCCGG1288910.15711926949578223No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGC1270720.15490189240030752No Hit
CAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGGG1256750.1531989370389122No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATA1252880.15272718061453136No Hit
TTCGCTTCTGGCGCCAAGCGCCCGGCCG1238680.15099618804961984No Hit
TGTGGGGGGGCCGGGCCACCCCTCCCACGGCGCGACCGCTCT1229930.14992955530715676No Hit
TCATTGATCATCGACACTTCGAACGCA1218930.1485886455737746No Hit
TGCCGCCTGGATACCGCAGCTAGGAATAATGGAAT1210540.14756589714985857No Hit
TCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC1146150.13971669917417878No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCC1121810.13674963163685863No Hit
ACGAGACTCTGGCATGCTAACTAGTTACGCGACCCC1119170.1364278133008469No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCC1107050.13495037457642947No Hit
TCATCTGTGGGATTATGACTGAAC1087550.13257330732179745No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTCG1086450.13243921634845923No Hit
CTCTAAGTCAGAATCCCGCCCAGGCGGAACGATAC1086040.13238923698566954No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTC1053070.12837016481206864No Hit
CGCTTCTGGCGCCAAGCGCCCGGCCGC1042030.12702437904329236No Hit
TATTGATCATCGACACTTCGAACGCA1015410.12377937748850752No Hit
CCCCCGCCCCTTGCCTCTCGGCG1015200.12375377830268841No Hit
TCTAAGTCAGAATCCCGCCCAGGCGGAACGATA1000070.12190941791486366No Hit
TAGCCTCGGTTGGCCTCGGATAGCCGGTCC977480.11915567692603612No Hit
TCGGGACCGGGGTCCGGTGCGGAGTGCCCTTC967820.11797811437835688No Hit
TGAGCCTCGGTTGGCCTCGGATAGCCGGTCCCCCG955920.11652749384860707No Hit
CCCCCGCGGGGGCGCGCCGGC955290.11645069629114974No Hit
GGCGGCGTCCGGTGAGCTCTCGCTGGCC954900.11640315494605709No Hit
TGACCGGGGTCCGGTGCGGAGTGCCCTTCG943520.11501592287643082No Hit
GGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGC939440.11451856726623089No Hit
CGGCGGCGTCCGGTGAGCTCTCGCTGGCC938590.11441495151410591No Hit
GAGCCTCGGTTGGCCTCGGATAGCCGGTCCCC936860.11420406298331034No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGG925330.11279854578095613No Hit
AGCACTCGCCGAATCCCGGGGCCGAGGGAGCGAG925310.11279610776325907No Hit
TCTCGGTTGGCCTCGGATAGCCGGTCCCC920280.11218294631244886No Hit
AAAAGCATCGCGAAGGCCCGC916530.1117258179942504No Hit
CCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG912550.11124065247253576No Hit
TGACCGGGGTCCGGTGCGGAGTGCCCTTC900720.10979856500472568No Hit
TGGCGTCCAGTGCGGTAACGCG893870.10896354394348315No Hit
TCAGTGCGCCCCGGGCGGGTCGCGCCGTCGGGCCCGGGG879770.10724474146705691No Hit
CCTCGCTTCTGGCGCCAAGCGCCCGGCCGC857760.10456170299144404No Hit
TGTGGGGGGGCCGGGCCA849060.10350116529322362No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCAC848110.10338535945261333No Hit
GGGTCGCGCCGTCGGGCCCGGGGG845300.10304281796617662No Hit
TAGCGCCGCGGAGCCTCGGTTGGCCTCGGATAGCCGGTC842140.10265761117004138No Hit
TAGCAGTGGCTGGTTGAGATTT834230.10169337517085476No Hit
CGCTTCTGGCGCCAAGCGCCCGGCC821800.10017814717213291No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)