FastQCFastQC Report
Sat 1 Jul 2023
SRR2392992_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2392992_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2218581
Total Bases335 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCGTGCGCAGTTCGCTATGCCTCTACTTGGATCTCTCGGTCCCGCGAA163350.7362814339435882No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAGTGT153380.6913427997445214No Hit
GTGCGCAGTTCGCTATGCCTCTACTTGGATCTCTCGGTCCCGCGAACAAG126500.5701842754445297No Hit
CCCTGCAGTACTCTAGTCTGCCCGTATCGCCCGCACGCCCACAGTTAAGC111960.5046468891602335No Hit
CCCGACTTTCGTCCCTGCTTGACTTGTAGGTCTCGCAGTCAAGCTCCCTT108680.48986266446886545No Hit
CCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTATCTCAGTCCCAGTGTG107880.48625675600755613No Hit
CGCCACTCGAGTACCCCGAAGGGCCTTTCCGTTCGACTTGCATGTGTTAA106180.4785942005272739No Hit
CTCCGGTTACCAAGCGTGCAATGTGGGTTGTGTGGGTGGCCTCGGCGCTT106030.4779180926907785No Hit
CTGCATTCTCACTCCCGCACCCTCCACTGCTGAATTACTTCGCAGCTTCG105130.47386144567180555No Hit
CGGGAACGTATTCACCGCAGCGTTGCTGATCTGCGATTACTAGCGACTCC104430.47070627576815993No Hit
CTCCCCTGCAGTACTCTAGTCTGCCCGTATCGCCCGCACGCCCACAGTTA103670.46728066272991614No Hit
CTTGGAATAGGTTTCCCGCTTAGATGCTTTCAGCGGTTATCCTGTCCGAA99630.4490708250003042No Hit
CTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCTGAGAGGCTT94050.4239196134826721No Hit
GTCCTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCTGAGAGG87360.3937652039749732No Hit
CGGCGGTGTCCTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGC86420.3895282615329348No Hit
CCGACTTTCGTCCCTGCTTGACTTGTAGGTCTCGCAGTCAAGCTCCCTTG86210.3885817105618411No Hit
CCTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCTGAGAGGCT84130.37920634856243696No Hit
CCCACAACCCCGCACACACAACCCCTACCAGGTATCACATGCATGCGGTT79340.3576159716503477No Hit
CTCCGCTTCGGGTCCAGAACACGCCACTATGGGCGCCCTATTCAGACTCG74120.33408741894030464No Hit
GCGGTGTCCTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCTG69640.3138943315569727No Hit
GGCGGTGTCCTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCT69220.31200122961478527No Hit
CTGGACATAAGGGGCATGATGACTTGACGTCATCCCCACCTTCCTCCGAG64660.2914475513853224No Hit
GGGTGACCTTATCCCTCTAAAAGGGTAAGAAACCTGGTCTTGGAATAGGT62790.28301874035701197No Hit
CTCTTCCTACGGGTACTGAGATGTTTCACTTCCCCGCGTTTCCTCCCAAA61170.2757167757228607No Hit
CCGCGAGTCACCTCGGATTGCCGTTAGCAATCACCCTGCTCTGTGAAGTC59550.2684148110887094No Hit
CTGCAGTACTCTAGTCTGCCCGTATCGCCCGCACGCCCACAGTTAAGCTG59420.26782885096374665No Hit
CCCGCGAGTCACCTCGGATTGCCGTTAGCAATCACCCTGCTCTGTGAAGT58840.26521456732929743No Hit
CACCCGTTCGCCACTCGAGTACCCCGAAGGGCCTTTCCGTTCGACTTGCA56780.25592935304142606No Hit
CCGGTTACCAAGCGTGCAATGTGGGTTGTGTGGGTGGCCTCGGCGCTTTC55490.2501148256475648No Hit
CTGTGGGTGACCTTATCCCTCTAAAAGGGTAAGAAACCTGGTCTTGGAAT54640.24628354790742368No Hit
CCGGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAGTG51840.23366286829284125No Hit
CTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCTGAGAGGCTTAGC50160.22609046052409176No Hit
CTCCCACAACCCCGCACACACAACCCCTACCAGGTATCACATGCATGCGG47560.21437125802483661No Hit
CTTCATTAAGGCTTCTCCGTGCGCAGTTCGCTATGCCTCTACTTGGATCT46830.21108086655389188No Hit
CTACGGGCTTGCTCCGGTATAACCACTAACCGGTACAGCTACCTTCCTGC45680.20589737314075982No Hit
GTACAAGGCCCGGGAACGTATTCACCGCAGCGTTGCTGATCTGCGATTAC45650.20576215157346067No Hit
CCTGGACATAAGGGGCATGATGACTTGACGTCATCCCCACCTTCCTCCGA45580.20544663458309612No Hit
GGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAGTGCA45460.20490574831389974No Hit
CTAGAGAGTATTTAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGAT45370.20450008361200242No Hit
CTCCGACTTCATGGGGTCGAGTTGCAGACCCCAATCCGAACTGAGACCAG45180.2036436803524415No Hit
GTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAGTGCAATTTCGCCGAG44340.19985747646806676No Hit
CCTGCATTCTCACTCCCGCACCCTCCACTGCTGAATTACTTCGCAGCTTC44200.19922644248733762No Hit
CCCGCGTTTCCTCCCAAAGCCTATATATTCAGCAGTGGGTAACACGACAT42950.19359221051654188No Hit
CCGCTACATTGTCGGCGCACAATCACTTGACCAGTGAGCTATTACGCACT42500.1915638870070554No Hit
CCCCGGGGTACCTTTTATCCGTTGAGCGACACCCCTTCCACTCAGAGGTG40110.18079123547889395No Hit
CGAGAACAGTACCATCGGCGCTGAGAGGCTTAGCTTCCGGGTTCGGGATG39980.1802052753539312No Hit
GGCGTCGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTG39630.17862769040210838No Hit
CCCCTGCAGTACTCTAGTCTGCCCGTATCGCCCGCACGCCCACAGTTAAG38430.17321882771014446No Hit
CTTGGATCTCTCGGTCCCGCGAACAAGCCGAGATGACGATCCCAGCCGCT38340.17281316300824717No Hit
CGACTTTCGTCCCTGCTTGACTTGTAGGTCTCGCAGTCAAGCTCCCTTGT38050.17150602119102254No Hit
GTTCGCCACTCGAGTACCCCGAAGGGCCTTTCCGTTCGACTTGCATGTGT37330.1682607035758442No Hit
GTCCGTGCTGGGACTCCCGCTTCGGGAGATCGGTCCTTCTCTTCCGGATC36720.1655111983740959No Hit
GTCGCTTCTCACTGGTCTCTGCGACCTCGTTCAGCTCACGGAGCAAGTCC36640.16515060752796495No Hit
CGGGGTCTTTTCGTCCTGCCGCGCGTAACGAGCATCTTTACTCGTAGTGC35840.16154469906665567No Hit
CTCTACTTGGATCTCTCGGTCCCGCGAACAAGCCGAGATGACGATCCCAG34020.15334125731717704No Hit
CCCGACTTACCCTGGGAGGACTAGCCTGGCCCAGGAACCCTTGGTCATTC33880.15271022333644796No Hit
CACTCGAGTACCCCGAAGGGCCTTTCCGTTCGACTTGCATGTGTTAAGCA33500.15099741681732604No Hit
GGTCCGTGCTGGGACTCCCGCTTCGGGAGATCGGTCCTTCTCTTCCGGAT33160.14946490572126958No Hit
TCCGTGCGCAGTTCGCTATGCCTCTACTTGGATCTCTCGGTCCCGCGAAC32970.14860850246170865No Hit
CCCGGGGTACCTTTTATCCGTTGAGCGACACCCCTTCCACTCAGAGGTGC32450.1462646619618576No Hit
CTCGAGTACCCCGAAGGGCCTTTCCGTTCGACTTGCATGTGTTAAGCACG30990.13968387901996815No Hit
GCCGTGTGTGAACTCACTAGAGGCTTTTCTTGGCAGCATAGGATCACTGA30680.1382865894912108No Hit
GCCTGCATTCTCACTCCCGCACCCTCCACTGCTGAATTACTTCGCAGCTT29820.13441023789530335No Hit
CCGTTCGCCACTCGAGTACCCCGAAGGGCCTTTCCGTTCGACTTGCATGT29260.13188610197238684No Hit
CCGGGAACGTATTCACCGCAGCGTTGCTGATCTGCGATTACTAGCGACTC29230.13175088040508776No Hit
CTGACAGACACGCAGTCGCTTAGGCAGCGAGTGCGTAGTCGCGCTGATGA29100.131164920280125No Hit
CGGGCCGTGTGTGAACTCACTAGAGGCTTTTCTTGGCAGCATAGGATCAC28840.12999300003019948No Hit
CGTGCGCAGTTCGCTATGCCTCTACTTGGATCTCTCGGTCCCGCGAACAA28790.12976763075136766No Hit
GGGGCCTTAGCCGGCGATCTGGGCTGTTTCCCTCTCGACGTACGGAGCTT28660.1291816706264049No Hit
CTGGTCTCTGCGACCTCGTTCAGCTCACGGAGCAAGTCCGGTCACCAAGC28470.12832526736684396No Hit
CCACAACCCCGCACACACAACCCCTACCAGGTATCACATGCATGCGGTTT28340.12773930724188118No Hit
GGCAGCTCCCCGAGGCTTATCGCAGCCTCCTACGTCCTTCTTCGGCTTCT28290.12751393796304936No Hit
CGTTGAGCGACACCCCTTCCACTCAGAGGTGCCGGATCACTAGTCCCGAC27590.12435876805940373No Hit
CTTCCTACGGGTACTGAGATGTTTCACTTCCCCGCGTTTCCTCCCAAAGC27510.1239981772132728No Hit
CTCGCAGTCAAGCTCCCTTGTGCACTTGCACTCAACACCTGATTGCCGTC27510.1239981772132728No Hit
GTCGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCT26710.12039226875196353No Hit
CGCTTCTCACTGGTCTCTGCGACCTCGTTCAGCTCACGGAGCAAGTCCGG26530.11958093934816895No Hit
GTGACCTTATCCCTCTAAAAGGGTAAGAAACCTGGTCTTGGAATAGGTTT26520.11953586549240257No Hit
CACTGGTCTCTGCGACCTCGTTCAGCTCACGGAGCAAGTCCGGTCACCAA25690.1157947354637942No Hit
AGAGTATTTAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGATTCCA25250.11381148581007411No Hit
CCGTGCGCAGTTCGCTATGCCTCTACTTGGATCTCTCGGTCCCGCGAACA25200.11358611653124227No Hit
CGGTGTCCTACTCTTCCGTTCCGTGTCGAGAACAGTACCATCGGCGCTGA25060.11295508255051315No Hit
CTTTTATCCGTTGAGCGACACCCCTTCCACTCAGAGGTGCCGGATCACTA24700.11133242374292396No Hit
CTCGTGCTGGGTTTCCCCATTCGGAGATCCTCGGATCAAAGCTCGGTTGG23940.10790681070468017No Hit
CCCCGCTACATTGTCGGCGCACAATCACTTGACCAGTGAGCTATTACGCA23870.10759129371431558No Hit
GTGTGAACTCACTAGAGGCTTTTCTTGGCAGCATAGGATCACTGAATTCG23860.10754621985854923No Hit
CCCATTCGGAGATCCTCGGATCAAAGCTCGGTTGGCAGCTCCCCGAGGCT23680.10673489045475464No Hit
CACCGGTGTTCCTCCTGATATCTGCGCATTCCACCGCTACACCAGGAATT23600.1063742996086237No Hit
CTCACTGGTCTCTGCGACCTCGTTCAGCTCACGGAGCAAGTCCGGTCACC23530.10605878261825916No Hit
GGCCTTGCTTCGGGTGGGGTTTACCGAGCCGAACCGGTCACCCGGTCCGC23450.10569819177212822No Hit
TGGCACTGTCCCGCGAGTCACCTCGGATTGCCGTTAGCAATCACCCTGCT23210.10461641923373544No Hit
GGTGACCTTATCCCTCTAAAAGGGTAAGAAACCTGGTCTTGGAATAGGTT23210.10461641923373544No Hit
CCCGTCGTCGCCTTGGTGGGCCATTACCCCACCAACAAGCTGATAGGCCG22760.10258809572424897No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)