FastQCFastQC Report
Sat 1 Jul 2023
SRR2392996.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2392996.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences12003461
Total Bases600.1 Mbp
Sequences flagged as poor quality0
Sequence length50
%GC58

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACGGCGGCCACAGCGAGAGGGAAACGCCCGGTCCCATCCCGAACCCGGA939560.7827409111422113No Hit
CGCCGGGGAGAGCGGTATCGAGGTTCTCGAGGACGAATTCGTCGAGAAGT866570.7219334490277429No Hit
CCATGGCCAGGGTGAAGCGGCGGTAAGACGCCGTGGAGGCCCGAACCCAC656500.5469255908774977No Hit
CCCATGGCCAGGGTGAAGCGGCGGTAAGACGCCGTGGAGGCCCGAACCCA548320.45680158414310673No Hit
GTTGCCCTGAAAGAGCGAGACCGGGACGAGGAAGCGATTCCGAAATCCCG544340.4534858737825699No Hit
ACCGCATGCATGTGATACCTGGTAGGGGTTGTGTGTGCGGGGTTGTGGGA539690.4496119910749075No Hit
CCGCATGCATGTGATACCTGGTAGGGGTTGTGTGTGCGGGGTTGTGGGAG534050.444913346242388No Hit
CGGTACTAACCACCCAAAAGGTTCTAGATCAATCTCTTCGGAGTGCGACG503060.41909579245519274No Hit
AGAGGGATAAGGTCACCCACAGACTATGGGTTCAATAGGCCAGACCTGCA490490.4086238127486731No Hit
CTGGTAGGGGTTGTGTGTGCGGGGTTGTGGGAGTTGTACTTGCCGGTTCT466820.3889045001270883No Hit
GCCTATCAAGCAAAGTCCCTTCGGGGATATCGGGTGCGGACCCGGAACCG452510.3769829385041531No Hit
CGCGGGGTGGAGCAGCTCGGTAGCTCGCTGGGCTCATAACCCAGAGGTCG451860.37644142801813574No Hit
GTTACGGCGGCCACAGCGAGAGGGAAACGCCCGGTCCCATCCCGAACCCG396990.33072961206771945No Hit
AGAGGGAAACAGCCCAGATCGCCGGCTAAGGCCCCTAAGCGTGTACTAAG373930.3115184862099356No Hit
GTCGCTCGGAAGAGCGAAAGTCGGAATTCAGGAAGAAATTCCAGAATCTC371470.3094690772936239No Hit
ACCCATGGCCAGGGTGAAGCGGCGGTAAGACGCCGTGGAGGCCCGAACCC333400.27775322467411695No Hit
ATATCGACCGCGGTTACCCGTTGTTCGTGGAGAATCTCCAGAGCTTGGGT332800.27725336884087015No Hit
GATAAGTGACATCCTTTAACGATCCGTCCAGTGAGGCGGAGAAGGAGGTC331380.27607037670218615No Hit
CTGCGTGGGACCTTCGGTGGTAGTAGTCAAGCGATGGGGTGACGCAGGAA324090.269997128328238No Hit
GCTCCACCGAAGACCGTCGGTCACCTCGTCAGAGGTTGAAGGTTCAGGAT324060.2699721355365757No Hit
GAAGGGGTGTCGCTCAACGGATAAAAGGTACCCCGGGGATAACAGGCTGA306160.25505976984471396No Hit
CCGTGAGTAGTGGCGAGCGAAAGCGGAAGATGGCTAAACCGCATGCATGT299610.24960301033177013No Hit
GTGAGCGACCCAGATGCCCGGTTGGCCAGCGATCTATCGCTTGTTGTGAT285250.23763979405606434No Hit
TACCCCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAAGGAATTGAC277920.23153322195989973No Hit
GTTAGATCACGTTTTGGTCACGTCAGGTCGTGGCGTCGAACGGAAGACTG271970.2265763182802027No Hit
ATGACCGCGACCGACACCCCAAAAACGAAATTCAACGCGCTTCTTCATGA269130.22421033400283466No Hit
ACCCCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAAGGAATTGACG248250.2068153510058474No Hit
CTCCCCGAAATGCATTTAGGTGCAGCGTCGCGTGTTTCTTGTTGGAGGTA243320.20270820224266983No Hit
CGGACCCCGCGCGGCGTCCATCCTGTGAACTCCCCCAGGGCTGGAAGGCA238600.19877600302112863No Hit
AACCCTTGTCCTATGTTGCCAGCGGGTAATGCCGGGGACTCGTAGGAGAC237670.19800122647959617No Hit
GAAGGTTAAGAGGACCCGTTAACCCTTGGGTGAAGCGGAGAATTTAAGCC233540.19456055216074764No Hit
ACTGCAGGGGAGACTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATAT233290.19435227889689483No Hit
CCCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAAGGAATTGACGGG232840.19397738702195974No Hit
TACCCATGGCCAGGGTGAAGCGGCGGTAAGACGCCGTGGAGGCCCGAACC232460.1936608116609035No Hit
CTGCGCGCCGAGCGCATTGCACGACAATGTTCTAGCCCCCGTCGTCTAGC229480.1911781943557779No Hit
CAAGGGTTCCTGGGCCAGGCTAGTCCTCCCAGGGTAAGTCGGGACCTAAG228690.190520050842003No Hit
CAAGGGAGCTTGACTGCGAGACCTACAAGTCAAGCAGGGACGAAAGTCGG227540.18956199382828004No Hit
GCACAGATCAACCGATTGCGCATGTTGAGAGGCCAGGACTGGAAGTGGCT225940.188229044939622No Hit
GAAGGGGGACCTCGCTTGGTGACCGGACTTGCTCCGTGAGCTGAACGAGG222250.18515493156515442No Hit
ATCGAAAGGGGCACGAAACAAGATGATATTTAAGGTCGGAGACACCGTTG219030.18247237192673013No Hit
ACTCGGCTATGCCGAGTGTGTCTCAGCCCGACCCCCCGGGGCTGATGCAC218830.18230575331564788No Hit
CCCCCGTAACTTCGGGAGAAGGGGGACCTCGCTTGGTGACCGGACTTGCT216920.18071454557981237No Hit
TCCGTGAGTAGTGGCGAGCGAAAGCGGAAGATGGCTAAACCGCATGCATG214930.17905669039954392No Hit
ACCGACTAGGAGGACACCGGTTCTCCAACCAGTCCGGCGGCCATAATTTC214050.17832356851078202No Hit
CTTAAGAAGACCGTCGCGAGGCTTCCGGCCCGCGGCATGCGGCCCAGCGG209490.1745246641781066No Hit
ACGTGGTCACGGGGGACGTGATCGCGAGGGTCGGGCGGGTTCTGGTCTCG209080.174183096025388No Hit
CCTCGGGGAGCTGCCAACCGAGCTTTGATCCGAGGATCTCCGAATGGGGA199170.16592714384626234No Hit
CCCTTCGGGGCAGTGGCATGGATGGGTAGGGGAGCGTCCTGCACCCAGCG186930.15573008484802842No Hit
CGCATGCATGTGATACCTGGTAGGGGTTGTGTGTGCGGGGTTGTGGGAGT186810.15563011368137908No Hit
AGGGTGAAGCGGCGGTAAGACGCCGTGGAGGCCCGAACCCACTTAGGTTG186700.15553847344528382No Hit
CCGTGGGTCAGCAGGGCCCCGAGCTTTGAAGAATTGCCCTGCGCAGTCGT182100.15170624539039199No Hit
CTGGGGCTGATTGATAGGCGAGGTGTTGGTCATGACGTCAACAGTGCCGA177940.1482405782798811No Hit
TCCCCGAAATGCATTTAGGTGCAGCGTCGCGTGTTTCTTGTTGGAGGTAG172390.14361691182234856No Hit
CGAGGTTAACCCGTGTGGGGTAGCCGTAGCGAAAGCGAGTCTGAATAGGG171010.14246724340588102No Hit
GTAGTAGACGTCTGAGATTTGGAGGGCTGGCGGTGGCCACGACCGAGGTT170850.14233394851701522No Hit
ACCAGGCCGGCGGACAGTAAAAAAGTGTCGTGATTAGCGGAAGTGGTCTG169480.14119261103110178No Hit
TGAGTGCAAGTGCACAAGGGAGCTTGACTGCGAGACCTACAAGTCAAGCA169060.14084271194782905No Hit
ACGCGAGCTGGGTTTAGAACGTCGTGAGACAGTTCGGTCTCTATCCGCCG167300.13937646817030522No Hit
ATGAAGGGACTCAGTCTTACTGCGATGATCGCGATGGGTGCGGGTGCTGC164540.13707713133737012No Hit
GAAGGTGGGGATGACGTCAAGTCATCATGCCCCTTATGTCCAGGGCTTCA164380.1369438364485043No Hit
CCCCGAAATGCATTTAGGTGCAGCGTCGCGTGTTTCTTGTTGGAGGTAGA163020.135810829893145No Hit
GAGAGGGAAACGCCCGGTCCCATCCCGAACCCGGAAGCTAAGCCTCTCAG162640.1354942545320887No Hit
ATGACTACAAATGTCGGGCAGGACCTCGTCAAGCACCTCTGGAAGTCAGC162160.13509436986549128No Hit
GCCCCCTTAGCTCAGTCGGCAGAGCGTTTCCATGGTAAGGAAAAGGTCAA161150.13425294587952594No Hit
TTTTGTTTGGAGAGTTTGATCCTGGCTCAGGACGAACGCTGGCGGCGTGC160540.13374475911572503No Hit
GTCCACCGAAGCAACCTGGAGAAAGCGTGAGCATCAATCCATTCGATGAT160340.13357814050464278No Hit
AAAGGTTCCCTCAACCTGGACGGCAATCAGGTGTTGAGTGCAAGTGCACA156200.13012913525524014No Hit
ACGGCGGCCACAGCGAGAGGGAAACGCCCGGTCCCATCCCGAACCCGGAA153230.12765484888066866No Hit
TACCAGGCCGGCGGACAGTAAAAAAGTGTCGTGATTAGCGGAAGTGGTCT152010.12663847535306694No Hit
ACCCCCGTAACTTCGGGAGAAGGGGGACCTCGCTTGGTGACCGGACTTGC151610.12630523813090241No Hit
GTGATGGGACACAGGGGTTTTCAGGGGTGTTGTCGCGGCTAGCCGTGTCC148880.12403089408962965No Hit
AGCGGAAGTGGTCTGGGACGGCCCGCCGCAGACGGTGAGAGTCCGGTACG147560.12293121125648677No Hit
ATGCACGGACGCGGAGTCCTTTCAGGCGTATGTGGAATCGCGACAATCAT144440.12033196092360363No Hit
ACGGCAGCGCGTAAATGCCGTCGGTGCGATTCGCTTTATCGGTCGCGGTG142430.11865744388222697No Hit
CAGGGTGAAGCGGCGGTAAGACGCCGTGGAGGCCCGAACCCACTTAGGTT138650.11550835213277237No Hit
TCGGGGTTTTCCCACCACAACGCGCCTGTCGGCTACTCGGGAGGCGCGTG137240.11433369092464249No Hit
GTCCTTCGACAAGACGGGAACCTGGTGTGATTCCAGGACGGTCGCGCCAC135510.11289243993878098No Hit
GTATGGCACAGAAGTCGACAAATGCCATCAGCGGTCGGTGGACCGGGGAC133920.11156782198067708No Hit
GTGCAGTCGCGAAGACAACCAGGAGGTTGGCTTAGAAGCAGCCACCCTTG131130.10924349235607964No Hit
ATGCCAGCCAAGACCGACCCAGCCGCGATCGACGACCTCGAGCCGCTGAC128780.10728572367586316No Hit
TACTGCAGGGGAGACTGGAATTCCTGGTGTAGCGGTGGAATGCGCAGATA128030.10666090388430471No Hit
CCCCGCCTGGGGAGTACGGTCGCAAGACTAAAACTCAAAGGAATTGACGG127300.10605274595385447No Hit
GTGAACAACCAAGCCTTGCTCGTAGTAATCGGTATGCGCGTCGACGCGTA127160.10593611292609689No Hit
GAAGGACCGGCCAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTCCG126600.1054695808150666No Hit
CAAGGCGACGACGGGTAGCCGGCCTGAGAGGGTGACCGGCCACACTGGGA125440.10450319287078952No Hit
GCGACCGTTCCCGACTCTGTCGGGGACATCAAGTGGAGTCCCGCTCCCAC124740.10392002773200162No Hit
TCCTGCACCCAGCGAAGCTGCGAAGTAATTCAGCAGTGGAGGGTGCGGGA124130.10341184096820076No Hit
CGAGGTCGCAGAGACCAGTGAGAAGCGACTGTTTACTAAAAACACAGGTC121090.1008792380797505No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)