FastQCFastQC Report
Mon 25 Sept 2023
SRR24044792_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24044792_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65979265
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAAAAAAAAAAAG1235660.18728004927002445No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1161940.17610684205105953No Hit
GGGCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA1013960.15367858371868798No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG934720.14166875002320803No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGAAAAAAAAAAAAAAA920860.13956809006587145No Hit
GGCCCCCGAATCCGGAGTGGCGGAGATGGGCGCCAAAAAAAAAAAAAAAG797580.1208834320903696No Hit
GGCCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA752460.11404492002146432No Hit
GGCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT730520.11071963290285214No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCAAAAAAAAAAAAAA686570.10405844927190383No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)