FastQCFastQC Report
Mon 25 Sept 2023
SRR24044796_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24044796_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67461543
Total Bases5.1 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1219510.1807711394920214No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAAAAAAAAAAAG1032580.1530620193493054No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1003600.1487662385664674No Hit
GGGCTCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAAAAAAGAT780200.1156510754579094No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)