FastQCFastQC Report
Mon 25 Sept 2023
SRR24044797_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24044797_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68907342
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAAAAAAAAAAAG1736460.251999271717664No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1338010.1941752447801571No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1129820.16396220884561183No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGAAAAAAAAAAAAAAA1036020.15034972615835335No Hit
GGGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAA929370.13487242041639047No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCAAAAAAAAAAAAAA835220.12120914488328398No Hit
GGGCTCGCTTCTGGCGCCAAGCGTCCGTCCCGCAAAAAAAAAAAAAAAGA732820.10634860941233229No Hit
GGGCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA731250.10612076721809992No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)