FastQCFastQC Report
Mon 25 Sept 2023
SRR24044799_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24044799_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68612057
Total Bases5.2 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA1592450.2320947759954202No Hit
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1375660.20049828851509288No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAAAAAAAAAAAG1219180.17769180131124768No Hit
GGCCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA1167040.17009255384953698No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1125750.16407466110511743No Hit
GGCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGAT1022730.14905980737467178No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGAAAAAAAAAAAAAAA916140.13352463693079483No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCAAAAAAAAAAAAAA727630.10604987400392324No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)