FastQCFastQC Report
Mon 25 Sept 2023
SRR24044800_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24044800_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72005138
Total Bases5.4 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1340180.18612282917921774No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAAAAAAAAAAAG1308880.18177591715746727No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1092720.15175583720150637No Hit
GGGCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA1038520.14422859657598322No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGAAAAAAAAAAAAAAA830820.11538343277669992No Hit
GGCCGGGGCCCGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAAAAAGA776240.10780341813941112No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)