FastQCFastQC Report
Mon 25 Sept 2023
SRR24044803_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24044803_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences66687716
Total Bases5 Gbp
Sequences flagged as poor quality0
Sequence length76
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1283280.19243124175972678No Hit
GGCCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAG1049100.1573153292579401No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCAAAAAAAAAAAAAAAG858320.12870736193754184No Hit
GGGCTCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAAAAAAGAT737990.11066355908785361No Hit
GGGCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCCAAAAAAAAAAAAA681520.10219573271935119No Hit
GGCGGGCCGCCGGTGAAATACCACTACTCTCATAAAAAAAAAAAAAAAGA676960.10151194861734356No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)