FastQCFastQC Report
Mon 25 Sept 2023
SRR24212096_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24212096_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67361041
Total Bases5.6 Gbp
Sequences flagged as poor quality0
Sequence length84
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAATTG7153801.062008528045165No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAATT6077390.9022114132707658No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAATTG4631590.6875769630697958No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAATTG4464380.6627540093983999No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAATTG4437400.6587487268790873No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAAAAAAAATTGGC4275520.6347170317632116No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAAA3721290.5524395028277547No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAATTGG3546200.5264467335057961No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAATTGG3481770.5168818575710551No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAATTGG3360980.49895012756706064No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAATTG3309160.4912572535807456No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAATTGG2967130.4404816131033367No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAAAAAAAAAAATTGG2812810.41757222843394No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGAAAAAAAAAAAAAA2689970.3993361682162839No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAATTGG2479930.36815493988580134No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAATTGG2396840.3558199167379257No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAAAATTG2350900.3489999508766499No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCACAAAAAAAAAAAAAAAATTG2334110.34650741219987974No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAAAAAAATTGGCA2148930.3190167444116548No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCAAAAAAAAAAAAAAA2128500.3159838340384318No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAATTGG2059800.3057850605366981No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAAAAATT2041530.3030728102910405No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAAAAAAAATT1932690.28691510275204923No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAATT1797020.2667743807581596No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAA1711640.2540993984935595No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAATTGG1652480.24531687388857307No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAAAAAAAATTG1643960.24405204782984277No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGGAAAAAAAAAAAAAAAATTG1566450.23254539667817783No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAAATTG1548680.22990737331390113No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAAAAAAAAAATT1511700.2244175531669708No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCCAAAAAAAAAAAAAAATTGG1493820.2217631998887903No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAAT1482930.22014653841231463No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAAT1436440.21324492298151984No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAATT1425350.21159857075249178No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTTGAAAAAAAAAAAAAAAATTGG1374030.20397992364755763No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAATTG1355980.20130033322970767No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAATTGGC1336150.19835649511414172No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAATTGGC1319940.19595005961977338No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCGAAAAAAAAAAAAAAAATT1307170.19405430506930557No Hit
CCCCCCGAGTGTTACAGCCCCCCGTGGGGGGCCCAAGTCCTTCTGATCGA1269020.18839079401994396No Hit
AGCCCGTGGACGGTGTGAGGCCGGTAGCGGCCCCCGGAAAAAAAAAAAAA1268590.1883269589019564No Hit
ATGAGAGGTGTAGAATAAGTGGGAGGCCCAAAAAAAAAAAAAAAATTGGC1226590.18209190086596197No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAATTGGC1220340.1811640648487009No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCAAAAAAAAAAAAAAAAATTGG1217130.18068752827023563No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGTCAAAAAAAAAAAAAAATTGG1179980.17517247098363578No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAAAAAAAAAATTGGC1174660.17438269696574316No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCCAAAAAAAAAAAAAAAATTGG1156510.171688261171617No Hit
CCCCCCGAGTGTTACAGCCCCCCCGCCGAGGGCGCACCACCGGCCCGTCT1142520.16961139303057982No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAAATT1108790.16460404761262523No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCGAAAAAAAAAAAAAAAATTG1107120.16435612982881306No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAAAAATT1080730.1604384350295299No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGAAAAAAAAAAAAAAAAATTG1069220.15872973222014192No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAAAAAAAATTGGC1065580.15818936052368907No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAATTGGC1043250.1548743880012187No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAAAAAAAAAAAAAAAAATT1036880.1539287375324262No Hit
TCGTTTTTTCACTGACCCGGTGAGGCGGGGAAAAAAAAAAAAAAAAATTG1034410.15356205673840462No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCACAAAAAAAAAAAAAAATTGG998570.1482414738810227No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCTCAAAAAAAAAAAAAAAATTG967240.1435904174936964No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAAAAAAAAAAAAAT957210.14210142625319583No Hit
GTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAAAAATTG946180.14046398124993348No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCACGAAAAAAAAAAAAAAA858720.1274802151587889No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAAAAAAAATTGGC856310.12712244159053301No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAAAAAAAAAAAATT851290.12637720370146893No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCCAGAAAAAAAAAAAAAAAA833060.12367089160632182No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGCGCAAAAAAAAAAAAAAAA822820.12215072507564127No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCACAAAAAAAAAAAAAAAAATT800630.11885653607995755No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTCAAAAAAAAAAAAAAATTG799710.11871995861821671No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCGTAAAAAAAAAAAAAAATTGG750810.11146056961916606No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCAAAAAAAAAAAAAAAAATTG747230.11092910514847892No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTGAAAAAAAAAAAAAAATTG746980.11089199170778849No Hit
CCCCCCGAGTGTTACAGCCCCCAAAAAAAAAAAAAAAATTGGCAGATCGG731010.10852118511648298No Hit
CGTGGGGGGCCCAAGTCCTTCTGATCGAGGCAAAAAAAAAAAAAATTGGC701090.10407944853465076No Hit
CCGCCGAGGGCGCACCACCGGCCCGTCTCTAAAAAAAAAAAAAAAATTGG700340.10396810821257944No Hit
CTCCCGGGGCTACGCCTGTCTGAGCGTCGCTTAAAAAAAAAAAAAAATTG686560.10192241536172222No Hit
GCTGAGAAGACGGTCGAACTTGACTATCAAAAAAAAAAAAAAAATTGGCA684440.10160769338466726No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)