FastQCFastQC Report
Mon 25 Sept 2023
SRR24451166_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR24451166_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65955746
Total Bases1.5 Gbp
Sequences flagged as poor quality0
Sequence length6-37
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAGGTGCACAATCGACCGATCCTG27904524.230794387497338No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAAT26759024.057117328337094No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAAT23344033.539347428501529No Hit
AAGAGGTGCACAATCGACCGATCCTG22266643.375996990466911No Hit
AGAGGTGCACAATCGACCGATCCTGA20146523.0545511531322838No Hit
ACGTTCTAGCATTCAAGGTC16736872.5375908870775263No Hit
AAGAGGTGCACAATCGACCGATCCTGA15756092.3888881493357683No Hit
TAGATGGATACGAATAAGGCGTC14794612.243111616082699No Hit
AGATGGATACGAATAAGGCGTC14101602.138039648584977No Hit
TTGCCCGAGTTGTAATTTG13286802.01450226944594No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGAA11577201.755298166137034No Hit
TGCCCGAGTTGTAATTTG10817371.6400951632023084No Hit
TTGCTCGAATATATTAGCATGGAATAATAGAA9301051.4101955574878948No Hit
TATAGATGGATACGAATAAGGCGTC8048491.2202864023401387No Hit
ATAAATCATTTGTATACGACTTAGAT7893431.1967766993341262No Hit
GTGCCCGAGTTGTAATTT5911110.8962236588151092No Hit
TGTGGCGTCGCTGAACCATA5825070.8831785482344481No Hit
GTGCCCGAGTTGTAATTTG4900040.7429284478110519No Hit
TTGTGGCGTCGCTGAACCATA4712490.7144927145543923No Hit
TTAGATGGATACGAATAAGGCGTC4600210.6974691788036178No Hit
ATAGATGGATACGAATAAGGCGTC4265870.6467776135835079No Hit
CACGTTCTAGCATTCAAGGTC3555440.5390644812053221No Hit
TTACTTATTCAATGAAGCGGAG3449820.5230507134283645No Hit
TGTGGCGTCGCTGAACCATAG3437620.5212009883111625No Hit
TCACGTTCTAGCATTCAAGGTC3384800.5131925882545548No Hit
TACTTATTCAATGAAGCGGAG3211020.4868446185113273No Hit
TTATAGATGGATACGAATAAGGCGTC3204970.4859273367933705No Hit
AAAGAGGTGCACAATCGACCGATCCTG2884010.4372644045296675No Hit
ATATAGATGGATACGAATAAGGCGTC2672050.40512770487047484No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCA2518100.3817862965267651No Hit
TAAGAGGTGCACAATCGACCGATCCTG2480760.37612492473362363No Hit
TTGTGGCGTCGCTGAACCATAG2474400.3751606418036724No Hit
TGTGCCCGAGTTGTAATTT2400700.3639864826940173No Hit
GATGGATACGAATAAGGCGTC2356820.3573335369446053No Hit
GAGGTGCACAATCGACCGATCCTG2339430.35469692056852786No Hit
ACGTTCTAGCATTCAAGGTCC2281370.3458940484124006No Hit
TGTGCCCGAGTTGTAATTTG2015570.30559429954745715No Hit
GTGGCGTCGCTGAACCATA1968890.298516826721966No Hit
AAAGAGGTGCACAATCGACCGATCCTGA1902170.288400952966251No Hit
TTTTACTTATTCAATGAAGCGGAG1896120.28748367124829427No Hit
TAGAGGTGCACAATCGACCGATCCTG1775330.2691698764198649No Hit
TTTACTTATTCAATGAAGCGGAG1733460.26282168046435256No Hit
GAGGTGCACAATCGACCGATCCTGA1733040.2627580014029407No Hit
AAATATAGATGGATACGAATAAGGCGTC1730270.2623380228312481No Hit
TTTGATGATTCATAATAACTTTTCGAATCGCA1653540.25070446477855013No Hit
TAAGAGGTGCACAATCGACCGATCCTGA1649270.2500570609875294No Hit
TGATGGATACGAATAAGGCGTC1617550.24524777568280406No Hit
TATATAGATGGATACGAATAAGGCGTC1541410.2337036715497085No Hit
AGAGGTGCACAATCGACCGATCCT1536270.23292436113147746No Hit
TTGATGATTCATAATAACTTTTCGAATCGCA1493350.22641696752243543No Hit
TTTTCTTTACTTATTCAATGAAGCGGA1425850.21618283265266985No Hit
AAGAGGTGCACAATCGACCGATCCT1319410.20004473908914622No Hit
TATGACTCTTAATCATAAGGTTAGGGGT1296350.19654845538400853No Hit
TTTTCTTTACTTATTCAATGAAGCGGAG1284510.19475331231944523No Hit
TAGAGGTGCACAATCGACCGATCCTGA1237480.18762277360944413No Hit
TTTGCTCGAATATATTAGCATGGAATAATAGA1132610.1717227184421506No Hit
TGCCCGAGTTGTAATTT1104420.16744864048691072No Hit
ATGGATACGAATAAGGCGTC1098740.16658745698972158No Hit
GTGGCGTCGCTGAACCATAG1028510.15593940822077884No Hit
CTGCCCGAGTTGTAATTTG1024320.15530413377478894No Hit
ACGTTCTAGCATTCAAGGTCCC994240.15074350004319562No Hit
TTTCTTTACTTATTCAATGAAGCGGAG993690.15066011079610864No Hit
TTTCTTTACTTATTCAATGAAGCGGA992030.15040842688671888No Hit
ACGAATAAGGCGTC977470.1482008860911072No Hit
TTGCCCGAGTTGTAATTT927900.14068524067637717No Hit
AAAGATTGGAAATCTTTTG913250.1384640543676058No Hit
TCTGACTTCTAATCAGAAGATTATGGGT904020.13706463118467344No Hit
TCTGACTTCTAATCAGA872350.13226292672059234No Hit
ATAGAAT851520.12910474850818912No Hit
AATAGATGGATACGAATAAGGCGTC838170.1270806640561688No Hit
TTGCTCGAATATATTAGCATGGAATAATAGA803660.12184836784349314No Hit
CATTCAAGGTC795810.12065817586234259No Hit
TTTTGATGATTCATAATAACTTTTCGAATCGCAT770180.1167722369480894No Hit
AAGAGGTGCACAAT749010.11356250901930515No Hit
TTGGCGTCGCTGAACCATAG701870.10641529245988668No Hit
TGCTCGAATATATTAGCATGGAATAATAGAAT685500.10393332523295241No Hit
TATGACTCTTAATCATA665260.1008646009401516No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)