FastQCFastQC Report
Sun 2 Jul 2023
SRR2818791_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2818791_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences62763007
Total Bases1.4 Gbp
Sequences flagged as poor quality0
Sequence length16-50
%GC72

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGCGAGGGGGGCCCGGGC18975553.0233653400322265No Hit
CTCCCCCGCTCCCCGTCCTCCCCC8676641.3824449169556199No Hit
TCCTCCTCGGCGCGCGGCGGCGG8266561.317107065950489No Hit
CTCTCTCTCTCCCCCGCTCCC5263810.8386803392004465No Hit
CGCGAGGGGGGCCCGGGC5246350.8358984457197852No Hit
TCTCTCTCTCTCCCCCGCTCCC5072750.8082388404366923No Hit
CCGCGAGGGGGGCCCGGG4367330.6958446079551287No Hit
CTCCCCCGCTCCCCGTCCTCCCCCC3925630.6254687574162915No Hit
CTCTCTCCCCCGCTCCCCGTCCTCCCCC3825280.6094800397310473No Hit
CTCTCCCCCGCTCCCCGTCCTCCCCC3341180.5323486173949569No Hit
CTCTCTCTCTCTCCCCCGCTCCC3229670.5145817822272282No Hit
TCCCCCGCTCCCCGTCCTCCCCC3206320.5108614378530334No Hit
CTCCCCCGCTCCCCGTCCTCCCC2350050.37443234674845965No Hit
CCGCGAGGGGGGCCCGGGCA2333800.3718432419912577No Hit
TGGGGGCGGGGAGCGGT2239660.3568439606470735No Hit
CTCCCCCGCTCCCCGTCCTCCCCCCT2144650.34170606261742686No Hit
CCCCCGCTCCCCGTCCTCCCCC2119690.33772919771036464No Hit
TCCTCCTCGGCGCGCGGCGGCGGC1897840.30238194291742587No Hit
CTCTCTCTCCCCCGCTCCCCGTCCTCCCCC1874370.29864247900040863No Hit
TCCCCCGCTCCCCGTCCTCCCCCC1574130.2508053828587276No Hit
CTCTCTCCCCCGCTCCCCGTCCTCCCCCC1561680.24882173029090207No Hit
CGCGGGCCGGTCCCCCCCGCCGGGT1553030.24744352991245303No Hit
CGCGAGGGGGGCCCGGG1549400.24686516374207498No Hit
CCCGCGAGGGGGGCCCGGGC1395170.2222917713295668No Hit
CTCTCCCCCGCTCCCCGTCCTCCCCCC1375550.219165726078102No Hit
GCTGAGAAGACGGTCGAACT1272380.20272769913653116No Hit
ACGTCTCGTCGCGCGCGCGTCC1224900.19516273335979584No Hit
AGGGTCGGGGCGGCAGGGG1215930.19373354753382035No Hit
CGCTGAGAAGACGGTCGAACT1188140.1893057800751962No Hit
CGGGGCGGCAGGGGCCGGCGGCGG1172540.18682023950828233No Hit
TCCCCCGCCCCACCCCGCGCGCGCCGC1163940.18545000560600927No Hit
TCCTCCTCGGCGCGCGGCGGCGGCGGCGG1162120.18516002587320265No Hit
CTCTCTCTCTCCCCCGCTCCCC1133490.18059842161482162No Hit
TCCCCCGCTCCCCGTCCTCCCC1103410.1758057895473364No Hit
CTCTCTCCCCCGCTCCCCGTCCTCCCC1090160.17369467336069477No Hit
CCCCCGCTCCCCGTCCTCCCCCC1073940.17111034848919843No Hit
CTCCTCCTCGGCGCGCGGCGGCGG1050780.16742027672447243No Hit
ACGTCTCGTCGCGCGCGCGTC1030950.16426077227306843No Hit
CGGAGGGCGGCGGCGGCGG1022980.16299091597061305No Hit
CTCCCCCGCCCCACCCCGCGCGCGCCGC1013640.16150277822093514No Hit
ACCCCGCGCGCGCCGCTCGCTCC1008870.16074277639374418No Hit
AGGGTCGGGGCGGCAGGG983140.15664322775357148No Hit
CTCTCCCCCGCTCCCCGTCCTCCCC945260.1506078254026293No Hit
TCTCTCTCTCTCCCCCGCTCCCC942180.15011709047018731No Hit
ACCCATTCGAACGTCTGCCCTATCAACTT888190.141514889495336No Hit
CTCTCTCCCCCGCTCCCCGTCCTCCCCCCT835510.13312141019629606No Hit
TCCCCCGCCCCACCCCGCGCGCGCCGCT821870.1309481554954816No Hit
CTGTCCCCGCCGGCGGGCCGCCC803130.12796232022471454No Hit
CCCGCTCCCCGTCCTCCCCC798860.12728198315928363No Hit
CGGAGGGCGGCGGCGGCGGCGG795940.12681674095060486No Hit
CCCACCCCGCGCCCTCTCTCTCTC788540.12563770247655598No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCCT781020.12443954445968466No Hit
CTCTCCCCCGCTCCCCGTCCTCCCCCCT773380.12322226689999095No Hit
CGGCGGGCCGCCCCCCCCCCTCCACGCGC767340.12225991657792941No Hit
CTCTCTCTCTCTCCCCCGCTCCCC756850.12058854987620335No Hit
CTGTCCCCGCCGGCGGGCCGCCCCCCCC756460.12052641136203049No Hit
TCCCCCGCTCCCCGTCCTCCCCCCT752340.1198699737251276No Hit
CTCCCCCGCCCCACCCCGCGCGCGCCGCT749100.1193537460689224No Hit
CCCACCCCGCGCCCTCTCTCTCT748860.11931550698327759No Hit
ACCCCACGTCTCGTCGCGCGCGCGTCC748720.11929320084998477No Hit
CCCACCCCGCGCCCTCTCTCT740020.1179070339953597No Hit
CCCGCGAGGGGGGCCCGGGCA737980.11758200176737867No Hit
TCTCTCCCCCGCTCCCCGTCCTCCCCC719910.11470291727737009No Hit
CACGTCTCGTCGCGCGCGCG715880.11406081929758402No Hit
CTGTCCCCGCCGGCGGGCCGCC714060.11377083956477739No Hit
TCCTCCTCGGCGCGCGGCGGCGGCGG688200.10965057808654706No Hit
CCCACCCCGCGCCCTCTCTCTC682820.10879338525000883No Hit
TCTCTCTCTCCCCCGCTCCCCGTCCTCCCCC674440.1074582038429102No Hit
CCCACCCCGCGCCCTCTCTCTCTCT664320.10584578906488659No Hit
TCTCTCTCCCCCGCTCCCCGTCCTCCCCC648250.10328536362191824No Hit
CCCCCGCTCCCCGTCCTCCCC640000.10197089505287725No Hit
ACCCCACGTCTCGTCGCGCGCGCG635280.10121885970186227No Hit
CCCACGTCTCGTCGCGCGCGCGTCC631140.10055923547448897No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)