FastQCFastQC Report
Mon 26 Jun 2023
SRR315598.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR315598.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17805861
Total Bases623.2 Mbp
Sequences flagged as poor quality0
Sequence length35
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT3150391.7692994458397715No Hit
ATCTGAGGGTCCAGGGTTCAGGTCCCTGTTCGAAA1232390.6921260364775396No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTC994600.558580121455514No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCC893240.5016550449315537No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT875180.49151231720836186No Hit
GGGGGGGGGATGCGTGCATTTATCAGATCAAAACC869420.4882774273032907No Hit
GGGGGGGGGATGCGTGCATTTATCAGATCAAAAAA763390.4287296188597676No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAA626820.35203015456539843No Hit
GGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCG550560.3092015600930502No Hit
GGGGGGGGGGATGCGTGCATTTATCAGATCAAAAA494240.277571525465688No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAACCA474320.2663841978773169No Hit
GGGGGGGGGGATGCGTGCATTTATCAGATCAAAAC411890.23132270885412393No Hit
GGGGGGGGATGCGTGCATTTATCAGATCAAAAAAA403000.22632997078883182No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA379190.21295796928887628No Hit
GCCCGGATAGCTCAGTCGGTAGAGCATCAGAAAAA374410.2102734599579318No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAA341840.1919817300606806No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAA323050.18142902497104746No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCC317670.17840754794165808No Hit
GTCTAGCGGTTAGGATTCCTGAAAAAAAAAAAAAA274120.15394930916286495No Hit
ATCTGAGGGTCCAGGGTTCATGTCCCTGTTCGAAA272090.1528092351164597No Hit
GGGGGGGATGCGTGCATTTATCAGATCAAAACCAA270210.15175340299466564No Hit
GGGGGGGGGGATGCGTGCATTTATCAGATAAAAAA264580.14859152275759088No Hit
AGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCC264580.14859152275759088No Hit
CGGTGGGGGGCGGGGCGGACTGTAAAAAAAAAAAA262170.14723803583550382No Hit
GCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGT255020.14322250409570197No Hit
GGGGGGGATGCGTGCATTTATCAGATCAAAAAAAA245870.1380837466944171No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGC245490.1378703338187353No Hit
TCGTCGCGCCGTCGGGTCCCGGGGGAAAAAAAAAA243380.1366853307458707No Hit
GGGGGGGGGATGCGTGCATTTATCAGATAAAAAAA237250.13324264409342518No Hit
TCGGCGGATCTTTCCCGCTCCCCGTTCCTCCCGAC215170.12084223279065247No Hit
ATGTACACGGAGTCGACCCGCAACGCGAAAAAAAA213760.12005035869930693No Hit
ACCCCCCGTCCTTTCCGAAAAAAAAAAAAAAAAAA212720.11946628135533574No Hit
ATGTACACGGAGTCGAGCTCAACCCGCAACGCGAA211670.11887658788305715No Hit
GTCTAGGGGTATGATTCTCGCAAAAAAAAAAAAAA205900.11563608184967859No Hit
TGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCC202600.11378275950823158No Hit
GGGGCTCTCGCTTCTGGCGCCAAGCGTCCGTCCAA200200.11243488871445194No Hit
GGGGGGGGGATGCGTGCATTTATCAGACCAAAAAA200000.11232256614830363No Hit
GTCTAGTGGTTAGGATTCGGCGAAAAAAAAAAAAA195720.10991886323272994No Hit
TCACCGCCCGTCCCCGCCCCTTGCCTCTCGGCGCC195100.1095706632776702No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)