FastQCFastQC Report
Mon 26 Jun 2023
SRR315626.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR315626.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17326228
Total Bases693 Mbp
Sequences flagged as poor quality0
Sequence length40
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCG1823401.0523929386130668No Hit
GGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACCG1318230.7608291891345307No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG1175050.6781914678717145No Hit
TTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACC949830.5482035674469943No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGG898520.5185895048824245No Hit
GGGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAA772450.4458269855389182No Hit
TTGGGGAAGGTGGCTCGGGGGGAAAAAAAAAAAAAAAAAA691650.39919248436532173No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCAAAAAA570850.32947159647212304No Hit
CCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGG562460.3246292268576865No Hit
GGGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAA557150.3215645090206593No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCAAAA542810.3132880393816819No Hit
TCGACTGCATAATTTGTGGTAGTGGGGGAAAAAAAAAAAA541840.31272819450373157No Hit
GGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCAAAAAAA486160.2805919441900453No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTAAAAA464970.26836193082533605No Hit
GGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGAAAAA439260.2535231557613117No Hit
GGGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAA430280.248340261942761No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCACAAAA422150.24364795384200183No Hit
CAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTAAAAAAA398230.22984229458367975No Hit
TGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAAAAA359510.20749467223910478No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGGGG353860.20423372011496096No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGAAAA353500.20402594263448456No Hit
CCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGG347670.20066110177010252No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCAAAAA331970.19159969498265866No Hit
CCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA326230.18828679848839575No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTAAAAAAA321130.18534328418164644No Hit
GGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTAAAA290710.16778608708138898No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA290510.16767065514779095No Hit
GGGGGGGGGATGCGTGCATTTATCAAAAAAAAAAAAAAAA286560.16539087445923026No Hit
TAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGAAAAAA277320.16005791912700212No Hit
TCTCCCGGGGCTACGCCTGTCTGAGCGTCGCTAAAAAAAA275230.15885165542090293No Hit
TTGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAAAA242960.14022671293486383No Hit
TGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGAAAA233390.134703294912199No Hit
GGGGGGGGATGCGTGCATTTATCAGAAAAAAAAAAAAAAA227130.13109027539058127No Hit
CCTCGGTTGGCCCCGGATAGCCGGGTCCCCGTCCGAAAAA219060.1264325968699015No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCCGGG219050.1264268252732216No Hit
TCCGCCGAGGGCGCACCACCGGCCCGTCTCGCAAAAAAAA218210.12594201115210996No Hit
TTGGGGAAGGTGGCTCGGGGGGGGAAAAAAAAAAAAAAAA211600.12212698574669571No Hit
TTCCCGTGGATCGCCTCAGCTGCGGCGGGCGTCGCGAAAA210890.12171720238242276No Hit
AGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCAAAAAAA205150.11840430588815984No Hit
GCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGAAAAAAAA196600.11346959072684487No Hit
TCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCAAAAA191020.11024903977946036No Hit
GGGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCGCGACC186510.10764604967682521No Hit
CGGGCGTGGGGGTGGGGGCCGGGCCGCCCCTCCCACGGCG185020.10678608177152003No Hit
GGGGGGTGGGGGCCGGGCCGCAAAAAAAAAAAAAAAAAAA181810.10493339923727195No Hit
CTTTGGTGACTCTAGATAACCTCGGGCCGATCGCAAAAAA178460.10299991434950526No Hit
AGGAGCCTCGGTTGGCCCCGGATAGCCGGGTCCCCGAAAA177340.1023534955213564No Hit
TCCAGTGCGCCCCGGGCGTCGTCGCGCCGTCGGGTCCAAA173740.10027572071659221No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)