FastQCFastQC Report
Sun 2 Jul 2023
SRR3182049.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3182049.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34021033
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN4237051.245420737224528No Hit
CTCAGATTGAACGCTGGCGGCAGGCCTAACACATGCAAGTCGAACGGTAA802120.2357717944660881No Hit
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN760680.22359109436800462No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)