FastQCFastQC Report
Sun 2 Jul 2023
SRR3306579.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3306579.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences69518074
Total Bases3.5 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCA6349460.9133538423403387No Hit
TACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCCCAAAGATTAAGCCA1994160.28685489761986216No Hit
TAGAATCTTAGTTCAACTTTAAATTTGCCCACAGAACCCTCTAAATCCCC1744820.2509879660935371No Hit
AACAGCTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATCA1680610.24175151918046522No Hit
GCCGGGCGCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAG1496230.21522892017980821No Hit
ACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGA1418850.20409800190954655No Hit
GTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGA1385470.19929637291159708No Hit
ATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCG1207470.17369152085542533No Hit
AGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAG1124840.16180540329699009No Hit
TAACAGCTAAGGACTGCAAAACCCCACTCTGCATCAACTGAACGCAAATC1107620.15932834963178066No Hit
CGCGACCTCAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTC1079920.15534377433989324No Hit
CGCACTAAGTTCGGCATCAATATGGTGACCTCCCGGGAGCGGGGGACCAC1027390.14778746603365334No Hit
CATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACC995630.1432188699589117No Hit
CTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAA976310.14043973657843284No Hit
TACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAG880680.12668360173499627No Hit
CTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAAAACCACGAGGAAGAG862850.12411880110487526No Hit
TTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTAGAGCACCGAA765110.11005914807133467No Hit
TGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATC745370.1072195987478019No Hit
CAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACGTGTA733670.10553658319130071No Hit
CTTTCAGGGATCATTTCTATAGTGTGTTACTAGAGAAGTTTCTCTGAACG700780.10080543946024742No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)