FastQCFastQC Report
Sun 2 Jul 2023
SRR3356525_1.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3356525_1.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27696228
Total Bases850.7 Mbp
Sequences flagged as poor quality0
Sequence length20-40
%GC47

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTAAACCATTCGTAGACGACCTGCT5499321.985584462981746No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCG2083150.7521421328565031No Hit
CTAAACCATTCGTAGACGACCTG1709220.6171309681592743No Hit
CTAAACCATTCGTAGACGACCTGC1619330.5846752850243723No Hit
CTAAACCATTCGTAGACGACCTGCC1515920.5473380707293426No Hit
CCGCCTGGATACCGCAGCTAGGAATAATG833970.3011132057405074No Hit
CTCGCCCGTCACGTTGAACGCACGTT698890.2523412213388769No Hit
CTAAACCATTCGTAGACGACCTGCTT498000.17980787853132926No Hit
TTGGTGACTCTAGATAACCTCGGGCCGATCGC482810.17432337717612664No Hit
TTTGGTGACTCTAGATAACCTCGGGCCGATCG470460.1698642862125485No Hit
CCGGGGCTACGCCTGTCTGAGCGTCGC460080.16611648344316055No Hit
TCTCGCCCGTCACGTTGAACGCACGTT436010.1574257693141463No Hit
TGAGAAGACGGTCGAACTTGACTATC395130.14266563663470708No Hit
TTAAAGCATCTGGCCTACACCCAGAAGAT378000.1364806788852258No Hit
CGCGGCGTGGGAAATGTGGCGT353150.1275083379585119No Hit
CCGCCTGGATACCGCAGCTAGGAATAATGG342900.12380747298874055No Hit
TCGCGGCGTGGGAAATGTGGCGT323010.11662598964739893No Hit
CCGCCTGGATACCGCAGCTAGGAATAAT308800.11149532708930615No Hit
TCGCTTCTGGCGCCAAGCGTCCGTC288870.1042994013480825No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)