FastQCFastQC Report
Sun 2 Jul 2023
SRR3356596.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3356596.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences43988871
Total Bases2.2 Gbp
Sequences flagged as poor quality0
Sequence length51
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGTAGAATTTGGATTTATATTAGTGAATTTTCATAATTTTAAGATTTG18496244.204754425272701No Hit
CGGCAATTTATCGCTTGTAAAATACTTGTTCCAGAATAATCGGCTAGACT2300910.523066391042407No Hit
CGGCTAGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATT1892310.4301792605679741No Hit
AGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATTATTAT1368630.31113096764861276No Hit
TGGCAGACATTCTAAATTATCTTTGGAGGCTGAGTAGTAACTGAGAACCC1123690.2554487020137435No Hit
TAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTC1116430.2537982845706588No Hit
GTCAGCGCGATATGCTCAAGTAAAAGATTAAGCCATGCATGCTTTGATTC1071580.2436025239201979No Hit
TTGTGATAACTGTTTTTATTTTTATATTAGAAAATTATATATTATATAAT1034300.23512765308298092No Hit
ATACCCGGTTTATGATTTAAGAAACATTTGGCCTACAATATTTTATATTA901970.2050450442340291No Hit
CATATGGATAACTGCGGAAATACTGGAGCTAATACATGCAACTATACCCC834390.1896820675393101No Hit
AGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATG821280.18670176827225232No Hit
CCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATGTTTGAA803020.1825507183396455No Hit
GCTAGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATTAT713660.16223648931567258No Hit
AGGGCAGAATATTATATAATAGTATTTCACTATATTTAATTTAAAGAATT618830.14067876395372822No Hit
GGCCTACAATATTTTATATTATGGATTTTAGTTTTAGTTAACTAAATGAA610460.13877600995942815No Hit
CCTCATATGGATAACTGCGGAAATACTGGAGCTAATACATGCAACTATAC602720.13701647400770983No Hit
AGGCAATAAAAATTTACCTCGGCAATTTATCGCTTGTAAAATACTTGTTC561460.12763682886973843No Hit
GGATAGCGGCACTGTTGGTTCGCTTGCTCCTTGGAGTCGGGTTGCTTGAA513010.11662267940452484No Hit
CAGGCAGTTATATTCGGTAAAGCTAATGATTAGAGGCCTTGGGGACGTAA503130.11437665676848129No Hit
ACCATGGTTGTTACGGGTAACGGAGAATAAGGGTTCGACTCCGGAGAGGG486330.11055750896630195No Hit
TGGCCTACAATATTTTATATTATGGATTTTAGTTTTAGTTAACTAAATGA454920.10341706655758454No Hit
CAACCTGAACTCAGTCGTGATTACCCGCTGAACTTAAGCATATCATTTAG446440.10148930623838925No Hit
TAGTACCTGGTTAGACAAAAATTAAAAGAGCAGGAGTAAAGTTGTATTTA444940.10114831089890895No Hit
CAGCGATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGC442240.10053451928784443No Hit
GGCTTCTGCCCTATGATATTTAAATGGCAGTCTTAGCGTGAGGACATTAA442240.10053451928784443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)