FastQCFastQC Report
Sun 2 Jul 2023
SRR3356598.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR3356598.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7983282
Total Bases407.1 Mbp
Sequences flagged as poor quality0
Sequence length51
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGTAGAATTTGGATTTATATTAGTGAATTTTCATAATTTTAAGATTTG3081303.8596907888259495No Hit
CGGCAATTTATCGCTTGTAAAATACTTGTTCCAGAATAATCGGCTAGACT378670.4743287284602999No Hit
CGGCTAGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATT324430.40638674670392455No Hit
AGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATTATTAT247530.3100604488229277No Hit
TGGCAGACATTCTAAATTATCTTTGGAGGCTGAGTAGTAACTGAGAACCC207230.2595799572155913No Hit
TAGCGTGAGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTC203660.25510811217742274No Hit
TTGTGATAACTGTTTTTATTTTTATATTAGAAAATTATATATTATATAAT165780.20765895530184203No Hit
ATACCCGGTTTATGATTTAAGAAACATTTGGCCTACAATATTTTATATTA156920.1965607628541745No Hit
AGGACATTAAGGTAGCAAAATAATTTGTGCTTTTATTGAGTTCCAGTATG141770.1775836053392577No Hit
CCAGTATGAATGAAGTTATTGGTTAGTTCTATTTATGTTTTATGTTTGAA134030.16788834466827052No Hit
GCTAGACTTGTTAAAGCTTGTACTTTAATTGATGTTAATTATGAAATTAT121380.1520427312977294No Hit
AGGGCAGAATATTATATAATAGTATTTCACTATATTTAATTTAAAGAATT107020.13405514173243535No Hit
GGCCTACAATATTTTATATTATGGATTTTAGTTTTAGTTAACTAAATGAA101360.12696532578956876No Hit
CAGCGATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTTGCTGC96160.12045171396926728No Hit
GTCAGCGCGATATGCTCAAGTAAAAGATTAAGCCATGCATGCTTTGATTC93770.11745795776724409No Hit
AGGCAATAAAAATTTACCTCGGCAATTTATCGCTTGTAAAATACTTGTTC93440.11704459394018651No Hit
AGCTTCAGCGATGGATCGGTTGCATCGAGTATCGATGAAGAACGCAGCTT86420.10825121798277951No Hit
TTGGAGGCTGAGTAGTAACTGAGAACCCTCATTAACTACTTAATTTTTTG81380.10193802498771809No Hit
CATATGGATAACTGCGGAAATACTGGAGCTAATACATGCAACTATACCCC80170.10042235762184025No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)